User: hudak7

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hudak70
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Posts by hudak7

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Comment: C: How can I extract paralogs and orthologs seperately from Orthofinder output?
... How do you retrieve the paralogs out of the Orthogroup.csv file? ...
written 22 months ago by hudak70
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Answer: A: OrthoMCL issue with BLAST and mySQL
... Did altering your blast script end up working? I am in the same boat. ...
written 2.0 years ago by hudak70
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Comment: C: A:orthomcl with local mysql server on linux server, complete install
... did you ever get an explanation for this? I am having the same exact error. ...
written 2.1 years ago by hudak70
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Answer: A: Easy way to run easily orthoMCL (Copy & paste)
... When i run orthomclLoadBlast it says my SimilarSequences table is full. Any idea what these means? I have tons of space in my disk space. ...
written 2.1 years ago by hudak70
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Comment: C: HMMER: Failed to open target sequence database for reading
... Hi, Did you ever find a solution to this problem? I am getting the same exact error message. ...
written 2.2 years ago by hudak70
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How to go from proteome of species A and compare genes to species B
... I have a transcriptome of a parasite (B) and want to do a dN/dS analysis. I have downloaded the FASTA file of the proteins for the parasite (A) I wish to compare mine with. I know I must use the proteome of A to find orthologs, but I am confused of how to use my transcriptome to find the orthologs ...
proteome orthologous pairs orthomcl rna-seq dn/ds written 2.3 years ago by hudak70 • updated 7 months ago by Biostar ♦♦ 20

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