User: Jennifer Pham

gravatar for Jennifer Pham
Jennifer Pham290
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290
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Location:
San Diego CA
Last seen:
2 weeks ago
Joined:
1 year, 2 months ago
Email:
h************@yahoo.com

Posts by Jennifer Pham

<prev • 24 results • page 1 of 3 • next >
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Tool: Hera-T: an efficient and accurate algorithm for single-cell transcript quantification
... We are delighted to introduce hera-T, a fast and accurate algorithm to quantify gene abundances from 10X-Chromium data with high rates of non-exonic reads, developed by BioTuring team. hera-T devises a new strategy for aligning reads to both transcriptome and genome references that considerably red ...
scrna-seq single-cell tool rna-seq written 16 days ago by Jennifer Pham290
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Comment: C: BioTuring Browser: Making single-cell sequencing data in published studies reall
... Hi, I think this would help: https://static.bioturing.com/v20181025/pdf/BBrowser_Documentation.pdf ...
written 6 weeks ago by Jennifer Pham290
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Answer: A: BioTuring Browser: Making single-cell sequencing data in published studies reall
... BBrowser now supports pairing clonotype data with expression data: https://www.youtube.com/watch?v=aGWpCVdJq3k&t=22s ...
written 6 weeks ago by Jennifer Pham290
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Answer: A: DE analysis using single cell RNA-seq data
... Check this if you want a UI: https://www.youtube.com/watch?v=vXaGctfwDvI ...
written 6 weeks ago by Jennifer Pham290 • updated 6 weeks ago by ATpoint15k
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Comment: C: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, v
... @nathanlee: I got it. The origins of the inner axes should have overlapped on each other. Yet you can adjust this in BioVinci ...
written 3 months ago by Jennifer Pham290
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Comment: C: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, v
... Yes @Shannon, you can apply log scale for the axes. ...
written 3 months ago by Jennifer Pham290
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Comment: C: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, v
... You can click Plot, and drag the third PC into the Z field. To find the third PC, check out the box on the bottom left corner of the screen. Here's a short tutorial for your reference: https://www.youtube.com/watch?v=6truZBwKEm8 ...
written 3 months ago by Jennifer Pham290
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Comment: C: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, v
... we support ubuntu 16.04 and 18.04 LTS ...
written 3 months ago by Jennifer Pham290
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Answer: A: BioTuring Browser: Making single-cell sequencing data in published studies reall
... Batch effect removal and differential expression analysis are now incorporated in BioTuring Browser: https://www.youtube.com/watch?v=0N7vouZqEoo&t=2s ...
written 6 months ago by Jennifer Pham290
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Answer: A: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, v
... BioTuring and BioVinci were featured on Genomeweb last week. Here's to take a look: https://www.genomeweb.com/informatics/bioturing-launches-browser-single-cell-bulk-rna-seq-data#.W7rU1WgzaUl ...
written 6 months ago by Jennifer Pham290

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