User: Jennifer Pham

gravatar for Jennifer Pham
Jennifer Pham380
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380
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Trusted
Location:
San Diego CA
Last seen:
2 months, 1 week ago
Joined:
2 years, 9 months ago
Email:
h************@yahoo.com

Posts by Jennifer Pham

<prev • 28 results • page 1 of 3 • next >
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News: [Webinar] Using t-SNE for data analysis : An Introduction by Dr. Laurens van der Maaten (Inventor of t-SNE, Research Director at Facebook AI Research)
... Dear Colleagues, I would like to invite you to join our up-coming webinar about t-SNE, delivered by the inventor of t-SNE - Dr. Laurens van der Maaten! As you know, t-SNE has been used extensively in biology for the last 10 years. However, there are not many resources that clearly explain the pros ...
scrna-seq news webinar t-sne written 10 weeks ago by Jennifer Pham380
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Tool: BioTuring Big Data: a new portal for reanalyzing large public single-cell RNA-seq data sets
... We introduce **BioTuring Big Data Portal** for reanalyzing large public single-cell data sets. The portal allows scientists to connect to BioTuring server and in real-time, explore its single-cell database of more than 6.5 million cells from more than 140 publications. Some data sets contain hundre ...
single-cell scrna-seq tool rna-seq written 7 months ago by Jennifer Pham380
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News: Webinar: Mapping the single-cell atlas of the bone marrow microenvironment
... Dear Colleagues, We would like to invite you to join our upcoming single-cell webinar, featuring "The bone marrow microenvironment at single-cell resolution", a study of Tikhonova et al., recently published in [Nature][1] (2019). **Key highlights:** - Using single-cell RNA sequencing to character ...
singlecell webinar next-gen news rna-seq written 16 months ago by Jennifer Pham380
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Answer: A: Webinar: Generating interpretable maps of single cell chromatin accessibility an
... Thanks Son for sharing! ...
written 19 months ago by Jennifer Pham380
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Tool: Hera-T: an efficient and accurate algorithm for quantifying single-cell UMI count data
... We are glad to introduce hera-T, a fast and accurate algorithm to quantify gene abundances from 10X-Chromium data with high rates of non-exonic reads, developed by BioTuring team. hera-T devises a new strategy for aligning reads to both transcriptome and genome references that considerably reduces ...
scrna-seq single-cell tool rna-seq written 20 months ago by Jennifer Pham380
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Comment: C: BioTuring Browser: Making single-cell sequencing data in published studies reall
... Hi, I think this would help: https://static.bioturing.com/v20181025/pdf/BBrowser_Documentation.pdf ...
written 21 months ago by Jennifer Pham380
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Answer: A: BioTuring Browser: Making single-cell sequencing data in published studies reall
... BBrowser now supports pairing clonotype data with expression data: https://www.youtube.com/watch?v=aGWpCVdJq3k&t=22s ...
written 21 months ago by Jennifer Pham380
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Answer: A: DE analysis using single cell RNA-seq data
... Check this if you want a UI: https://www.youtube.com/watch?v=vXaGctfwDvI ...
written 21 months ago by Jennifer Pham380 • updated 21 months ago by ATpoint41k
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Comment: C: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, v
... @nathanlee: I got it. The origins of the inner axes should have overlapped on each other. Yet you can adjust this in BioVinci ...
written 23 months ago by Jennifer Pham380
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Comment: C: BioVinci: user-friendly software to make plotting easy - PCA, 3D scatter plot, v
... Yes @Shannon, you can apply log scale for the axes. ...
written 23 months ago by Jennifer Pham380

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