User: anasofiamoreira94

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Posts by anasofiamoreira94

<prev • 19 results • page 1 of 2 • next >
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Cutadapt in windows
... Hello, I've installed cutadapt in python 2.7, however i uninstalled it and installed the version 3.7 but can't instal it. Also, when i try to install it i get this error: error: Microsoft Visual C++ 14.0 is required. Get it with "Microsoft Visual C++ Build Tools": https://visualstudio.microsoft.co ...
windows10 python 3.7.2 cutadapt written 17 days ago by anasofiamoreira9430
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Comment: A: ncbi database update
... I've tried to do this command: blastdbcmd -db nt -taxids 3708 -out Brassica_napus.txt However i got this error: [blastdbcmd] Taxonomy list is not supported in v4 BLAST db.I really don't understand it. ...
written 20 days ago by anasofiamoreira9430
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Comment: C: ncbi database update
... I'm sorry for the trouble and thanks for the help :) ...
written 21 days ago by anasofiamoreira9430
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ncbi database update
... Good morning, I have some doubts concerning NCBI database. I'm using all database from NCBI, but now we only want to have some species, that are presented in the all database of NCBI. But now I'm not entirely sure on how to do this, because the goal is to eliminate some species in the result, and fi ...
database news blast written 21 days ago by anasofiamoreira9430 • updated 20 days ago by gb590
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Comment: C: Naive question about blast db
... thanks you so much for the help! ...
written 5 months ago by anasofiamoreira9430
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Comment: C: Naive question about blast db
... sorry, i wasn't clear, im using cmd.exe ...
written 5 months ago by anasofiamoreira9430
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Comment: C: Naive question about blast db
... When i do ls /path/blastdb/nt it outputs the lists: (example) C:\ncbi-blast-2.8.0+\bin\all_nt\nt.60.nhd C:\ncbi-blast-2.8.0+\bin\all_nt\nt.60.nhi C:\ncbi-blast-2.8.0+\bin\all_nt\nt.60.nhr C:\ncbi-blast-2.8.0+\bin\all_nt\nt.60.nin C:\ncbi-blast-2.8.0+\bin\all_nt\nt.60.nnd C: ...
written 5 months ago by anasofiamoreira9430 • updated 5 months ago by genomax62k
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Comment: C: Naive question about blast db
... i have my real path their, of course. i put it their to exemplify my error. ...
written 5 months ago by anasofiamoreira9430
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Comment: C: Naive question about blast db
... I'm so sorry to boder you, i've already download the nt databases and then i tryied to do the blast: blastn -query sample.fasta -db /path/blastdb/nt -task megablast -outfmt 6 –max_target_seqs 10 > Resultado.txt however, i have this error: No alias or index file found for nucleotide databas ...
written 5 months ago by anasofiamoreira9430 • updated 5 months ago by h.mon23k
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Trying to use meshclust in windows
... Good morning, I'm using the meshclust in linux, but do you know if we could use it in windows? Many thanks ...
next-gen sequencing written 5 months ago by anasofiamoreira9430 • updated 5 months ago by genomax62k

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