User: ccolmenares

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Posts by ccolmenares

<prev • 7 results • page 1 of 1 • next >
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Comment: C: SNPTEST in mac
... thanks!! I will do it the next time! ...
written 6 months ago by ccolmenares0
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SNPTEST in mac
... Hi everyone. I've received impute2 files in gz format and I want to running in SNPTEST I use the next command ./snptest -data /Users/claudiacolmenares/Desktop/PA_gwas_chr_4_python_filtered.impute2.gz.gen /Users/claudiacolmenares/Desktop/PA_gwas_chr_4_python_filtered.impute2.gz.sample -summary ...
snp written 6 months ago by ccolmenares0 • updated 6 months ago by Ram17k
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Answer: A: How to use SNPtest and QCtool
... Hi! I'm just wondering, could you figured it out how to use SNPtest? I 'm trying to use it as well. Let me know, Thanks! ...
written 6 months ago by ccolmenares0
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Comment: A: How to run PLINK from a personal computer
... Hi Ram, Already adjusted the path and I been able to run the program. I received files like this `PA_gwas_chr_1_python_filtered.impute2.gz` and I want to generate `.bed`. and `.fam` files but I really do not know how... I apreciatte any advice, I'm new to those softwares. Thanks! ...
written 7 months ago by ccolmenares0 • updated 7 months ago by Ram17k
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Comment: C: How to run PLINK from a personal computer
... Hey Maxime, I already tried and it's the same situation Thanks ...
written 7 months ago by ccolmenares0
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How to run PLINK from a personal computer
... Hi! This is my situation. I recieved a file in impute2 version and I need to do a mendelian randomization analysis. My plan was: 1. Convert the file to a plink format 2. Import those files in R 3. Do the GWAS analysis 4. Select de SNP's associated with a specific trait 5. Import ...
plink written 7 months ago by ccolmenares0
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Answer: A: How to work PLINK from server?
... Hi, Do you have an update on the link you gave. It goes to partners healthcare page. Thanks ...
written 7 months ago by ccolmenares0

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