User: ccolmenares

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Posts by ccolmenares

<prev • 7 results • page 1 of 1 • next >
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Comment: C: SNPTEST in mac
... thanks!! I will do it the next time! ...
written 23 months ago by ccolmenares0
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SNPTEST in mac
... Hi everyone. I've received impute2 files in gz format and I want to running in SNPTEST I use the next command ./snptest -data /Users/claudiacolmenares/Desktop/PA_gwas_chr_4_python_filtered.impute2.gz.gen /Users/claudiacolmenares/Desktop/PA_gwas_chr_4_python_filtered.impute2.gz.sample -summary ...
snp written 23 months ago by ccolmenares0 • updated 23 months ago by RamRS25k
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Comment: A: How to use SNPtest and QCtool
... Hi! I'm just wondering, could you figured it out how to use SNPtest? I 'm trying to use it as well. Let me know, Thanks! ...
written 23 months ago by ccolmenares0
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Comment: A: How to run PLINK from a personal computer
... Hi Ram, Already adjusted the path and I been able to run the program. I received files like this `PA_gwas_chr_1_python_filtered.impute2.gz` and I want to generate `.bed`. and `.fam` files but I really do not know how... I apreciatte any advice, I'm new to those softwares. Thanks! ...
written 2.0 years ago by ccolmenares0 • updated 2.0 years ago by RamRS25k
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Comment: C: How to run PLINK from a personal computer
... Hey Maxime, I already tried and it's the same situation Thanks ...
written 2.0 years ago by ccolmenares0
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How to run PLINK from a personal computer
... Hi! This is my situation. I recieved a file in impute2 version and I need to do a mendelian randomization analysis. My plan was: 1. Convert the file to a plink format 2. Import those files in R 3. Do the GWAS analysis 4. Select de SNP's associated with a specific trait 5. Import ...
plink written 2.0 years ago by ccolmenares0
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Answer: A: How to work PLINK from server?
... Hi, Do you have an update on the link you gave. It goes to partners healthcare page. Thanks ...
written 2.0 years ago by ccolmenares0

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