User: mathisdead

gravatar for mathisdead
mathisdead10
Reputation:
10
Status:
Suspended
Location:
Last seen:
1 year ago
Joined:
1 year ago
Email:
m*********@aol.com

Posts by mathisdead

<prev • 13 results • page 1 of 2 • next >
0
votes
1
answer
523
views
1
answers
Comment: C: Is it possible to run VEP on a merged VCF file derived from a 30 VCFs from the s
... thx, show a Python or Ruby code of such a script, pls ...
written 12 months ago by mathisdead10
1
vote
1
answer
421
views
1
answer
Are there any similar alternatives to VEP and wAnnovar to annotate and postprocess a human genome Illumina VCF?
... Are there any similar alternatives to VEP and wAnnovar to annotate and postprocess a human genome Illumina VCF? ...
human genome annotation wannovar vep vcf written 12 months ago by mathisdead10 • updated 12 months ago by Pierre Lindenbaum118k
1
vote
1
answer
289
views
1
answer
What web services can annotate and postprocess a complete human genome VCF coming from Illumina Tru-seq machine?
... What web services can annotate and postprocess a human genome VCF coming from Illumina Tru-seq machine? Have a whole genome SNP/indel discovery VCF from the Illumina. Young adult patient has a medullary thyroid cancer. Looking for a proper tools to annotate and postprocess it to build good reports a ...
vcf illumina postprocessing annotation written 12 months ago by mathisdead10 • updated 12 months ago by andrew450
1
vote
1
answer
249
views
1
answer
What software is designed to do human identity analysis applying CODIS and other panels of forensically relevant genome biomarkers?
... What software is designed to do human identity analysis applying CODIS and other panels of forensically relevant genome biomarkers? I have found only the products of Softgenetics company. Are there any free or commercial alternatives? Thx. ...
str forensic human identity codis written 12 months ago by mathisdead10 • updated 3 months ago by griley50000
0
votes
0
answers
215
views
0
answers
Are there any STR and other forensic genomics references packages to use them for alignment against a complete genome of a suspect?
... Are there any STR and other forensic genomics references packages to use them for alignment against a complete genome of a suspect? I have a human genome in fastq format and looking for a set of forensic CODIS or similar reference sequences, where I can download them or I should find separate genes ...
str forensic suspect written 12 months ago by mathisdead10
2
votes
1
answer
610
views
5 follow
1
answer
Where I can download separate complete human chromosome genomes in GenBank format to do alignment?
... Where I can download separate complete human chromosome genomes in GenBank format to do alignment? I could find them in FASTA, need full GenBank format with annotation. ...
genome annotation human genbank written 12 months ago by mathisdead10 • updated 12 months ago by a.zielezinski8.6k
3
votes
1
answer
523
views
1
answer
(Closed) Is it possible to run VEP on a merged VCF file derived from a 30 VCFs from the separate reference gene alignments?
... Is it possible to run VEP on a merged VCF file derived from a 30 VCFs from the separate reference gene alignments? And is there any rational way to run VEP on a batch of separate VCFs? ...
vcf annotation vep human written 12 months ago by mathisdead10 • updated 12 months ago by Emily_Ensembl17k
0
votes
0
answers
419
views
0
answers
Comment: C: How to further process and annotate VCF files derived from mapping a patient`s w
... Thx. Can I use wANNOVAR or the other web service? ...
written 12 months ago by mathisdead10
0
votes
0
answers
419
views
0
answers
Comment: C: How to further process and annotate VCF files derived from mapping a patient`s w
... I used that format for references only. No matter what format I will get on annotation. thx. ...
written 12 months ago by mathisdead10
0
votes
0
answers
419
views
0
answers
How to further process and annotate VCF files derived from mapping a patient`s whole genome FASTQs to a separate genes GenBank (.gbk) files?
... How to further process and annotate VCF files derived from mapping a patient`s whole genome FASTQs to a separate genes GenBank (.gbk) files? I have genome of a patient having medullary thyroid cancer. I have run alignment to a set of 30 genes relevant to cancerogenesis and chemotherapy decision. Som ...
vcf annotation human post processing written 12 months ago by mathisdead10

Latest awards to mathisdead

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1746 users visited in the last hour