User: mathisdead

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mathisdead0
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Posts by mathisdead

<prev • 13 results • page 1 of 2 • next >
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Comment: C: Is it possible to run VEP on a merged VCF file derived from a 30 VCFs from the s
... thx, show a Python or Ruby code of such a script, pls ...
written 3 months ago by mathisdead0
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Are there any similar alternatives to VEP and wAnnovar to annotate and postprocess a human genome Illumina VCF?
... Are there any similar alternatives to VEP and wAnnovar to annotate and postprocess a human genome Illumina VCF? ...
human genome annotation wannovar vep vcf written 3 months ago by mathisdead0 • updated 3 months ago by Pierre Lindenbaum108k
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What web services can annotate and postprocess a complete human genome VCF coming from Illumina Tru-seq machine?
... What web services can annotate and postprocess a human genome VCF coming from Illumina Tru-seq machine? Have a whole genome SNP/indel discovery VCF from the Illumina. Young adult patient has a medullary thyroid cancer. Looking for a proper tools to annotate and postprocess it to build good reports a ...
vcf illumina postprocessing annotation written 3 months ago by mathisdead0 • updated 3 months ago by andrew420
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What software is designed to do human identity analysis applying CODIS and other panels of forensically relevant genome biomarkers?
... What software is designed to do human identity analysis applying CODIS and other panels of forensically relevant genome biomarkers? I have found only the products of Softgenetics company. Are there any free or commercial alternatives? Thx. ...
str forensic human identity codis written 3 months ago by mathisdead0
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Are there any STR and other forensic genomics references packages to use them for alignment against a complete genome of a suspect?
... Are there any STR and other forensic genomics references packages to use them for alignment against a complete genome of a suspect? I have a human genome in fastq format and looking for a set of forensic CODIS or similar reference sequences, where I can download them or I should find separate genes ...
str forensic suspect written 3 months ago by mathisdead0
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Where I can download separate complete human chromosome genomes in GenBank format to do alignment?
... Where I can download separate complete human chromosome genomes in GenBank format to do alignment? I could find them in FASTA, need full GenBank format with annotation. ...
genome annotation human genbank written 3 months ago by mathisdead0 • updated 3 months ago by a.zielezinski8.3k
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(Closed) Is it possible to run VEP on a merged VCF file derived from a 30 VCFs from the separate reference gene alignments?
... Is it possible to run VEP on a merged VCF file derived from a 30 VCFs from the separate reference gene alignments? And is there any rational way to run VEP on a batch of separate VCFs? ...
vcf annotation vep human written 3 months ago by mathisdead0 • updated 3 months ago by Emily_Ensembl15k
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Comment: C: How to further process and annotate VCF files derived from mapping a patient`s w
... Thx. Can I use wANNOVAR or the other web service? ...
written 3 months ago by mathisdead0
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Comment: C: How to further process and annotate VCF files derived from mapping a patient`s w
... I used that format for references only. No matter what format I will get on annotation. thx. ...
written 3 months ago by mathisdead0
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How to further process and annotate VCF files derived from mapping a patient`s whole genome FASTQs to a separate genes GenBank (.gbk) files?
... How to further process and annotate VCF files derived from mapping a patient`s whole genome FASTQs to a separate genes GenBank (.gbk) files? I have genome of a patient having medullary thyroid cancer. I have run alignment to a set of 30 genes relevant to cancerogenesis and chemotherapy decision. Som ...
vcf annotation human post processing written 3 months ago by mathisdead0

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