User: soojinima

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soojinima10
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8 months, 4 weeks ago
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2 years, 1 month ago
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Posts by soojinima

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Question about gene ontology data visualization
... Thank you for your kindly answer. But I actually want to visualize just one GO pathway and included gene. ...
written 8 months ago by soojinima10
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Question about gene ontology data visualization
... I analysed GEO database about my research fields. I want to use these results for validating my data. I filtered gene list and gene ontology analysis was performed using David's functional annotation tool. I confirmed that the specific pathway I thought was equally activated in the experimental set ...
R gene ontology visualization rna-seq go written 8 months ago by soojinima10 • updated 8 months ago by Pietro100
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Comment: C: DESEQ analysis contain rlog formation?
... Thank you very much. I was misunderstanding about rlog transformation. "not for DEG but for visualization" Thank you... ...
written 2.1 years ago by soojinima10
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Comment: C: DESEQ analysis contain rlog formation?
... Thank you for your kindly reply. It's a basic concept, but I do not know well, so can I ask you a question? If the default DESeq function will not give me rlog transformed data, and the data used in the deseq analysis are not rlog-transformed, so the heteroskedasticity is high, can I interpret the ...
written 2.1 years ago by soojinima10
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DESEQ analysis contain rlog formation?
... Hi. I am a 'R' starter. And recently, I analysed GEO database about my research fields. I have a question about analytic method. The analytic method of DEseq2 contain rlog formation? To reduce the amount of heteroskedasticity, many analytic methods contain several means to shrink the variance of low ...
rlog deseq2 rna-seq raw counts written 2.1 years ago by soojinima10
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DESEQ analysis and result
... Hi. I am a 'R' starter. And recently, I analysed GEO database about my research fields. I have a question about results of my analysis. For example, I analysed GEO data which numbered GSE92506. This data shows about the reaction of HUVEC cell to disturbed shear stress model. They opened some analyti ...
sequencing deseq2 rna-seq fold change written 2.1 years ago by soojinima10

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Popular Question 2.1 years ago, created a question with more than 1,000 views. For DESEQ analysis and result

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