User: joldare

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joldare10
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In the way of learning Bioinformatics.

Posts by joldare

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Answer: A: Kaplan Meier Hazard Ratio
... You can use TCGABiolinks package for this purpose. here is a good article about it [link][1] [1]: https://bioc.ism.ac.jp/packages/3.2/bioc/vignettes/TCGAbiolinks/inst/doc/tcgaBiolinks.html ...
written 26 days ago by joldare10
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Answer: A: compare to list of genes about its function in growth and other pathway with vis
... [David][1] and [Enrichr][2] are very powerful tools. Enrichr checks many databases but also you can chackout [KEGG][3] and [Reactome][4] directly too. both of them have visualisation. KEGG's data is provided manually and it is more reputable. [1]: https://david.ncifcrf.gov/ [2]: http://amp.pha ...
written 9 months ago by joldare10
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Differential Expression Analysis on miRNA Normalized data
... Hello, I have a normalized miRNA data matrix of 6 groups. every group has 3 samples. density plot of each sample is: ![density plot][1] I have no access to the raw count data. So for analysing this matrix I used limma package. But results I get are not as it must be (based on the corresponding pape ...
R normalization limma rna-seq mirna written 9 months ago by joldare10

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