User: tesic93

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tesic9310
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Posts by tesic93

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sRNAbench warnings during novel miRNA identification
... HI! While running novel miRNA identification with sRNAbench on this [file][1] with parameters dbPath=sRNAtoolboxDB input=/path_to_file/ERR187516.fastq.gz output=sRNAtoolboxDB/out/ERR187516_miR microRNA=hsa species=ucsc.hg19 p=4 adapter=TGGAATTCTCGGGTGCCAAGGAACTC adapterMinLength=6 adapterMM=1 ...
novel mirna identification srnabench mirna written 9 months ago by tesic9310
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Comment: C: Novel miRNA identification
... Thanks! I'll try using sRNAbench then. ...
written 9 months ago by tesic9310
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Comment: C: Novel miRNA identification
... sRNAbench can't be downloaded from their [website][1] as far as I know, they had a server crash from which they didn't recover fully. CAP-miRSEQ seems to use miRDeep2 for alignment, so I can't use it because of miRDeep's academic-only license. [1]: http://bioinfo2.ugr.es:8080/srnatoolbox/quick ...
written 9 months ago by tesic9310
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Comment: C: Novel miRNA identification
... Thanks, I've included that in the initial question. ...
written 9 months ago by tesic9310
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Comment: C: Novel miRNA identification
... Sorry, I should have been clearer with the question. I need a tool that can do the following: - can be used for human sequences - can identify novel mature miRNA sequences - can handle input read that have miRNA-Seq experimental strategy (but tools that can handle input files with other experimen ...
written 9 months ago by tesic9310
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Novel miRNA identification
... Hi! What are some good open-licensed tools for novel miRNA identification from miRNA-Seq files? I've combed trough [tools4mirs.org][1], but I haven't found something that suits my usecase, since most of them are either dependent on miRDeep2, which is licensed, or aren't quite what I need. I need a ...
novel mirna identification mirna-seq mirna written 9 months ago by tesic9310

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