User: spandankeshav

gravatar for spandankeshav
Reputation:
60
Status:
New User
Location:
Finland
Twitter:
spandankeshav
Last seen:
4 years, 1 month ago
Joined:
7 years, 7 months ago
Email:
s************@gmail.com

Bioinformatician

Posts by spandankeshav

<prev • 13 results • page 1 of 2 • next >
2
votes
1
answer
1.8k
views
1
answer
How To Retrieve An Ancestral Sequences In A Phylogenetic Tree?
... Hi, Is it possible to retrieve sequence of a node (ancestor) from the respective taxa in a phylogenetic tree? Let's make it clear this way: for example, I have 6 different taxa which, were derived from a single node in a rooted phylogenetic tree. As, I already know the sequences of the taxa(s) but w ...
bioinformatics written 6.0 years ago by spandankeshav60 • updated 6.0 years ago by Biojl1.7k
0
votes
2
answers
12k
views
2
answers
Comment: C: .Xyz To .Pdb Conversion
... well, I figured it out. Thanks a lot for the help. I really appreciate. cheers1 ...
written 6.0 years ago by spandankeshav60
0
votes
2
answers
12k
views
2
answers
Comment: C: .Xyz To .Pdb Conversion
... Thanks Pgibas. But it didn't work for me. I don't know why but I tried it several times but nothing came. As I uploaded the input file and choose the output forma and then again clicked the convert button but still.....didn't get anything.. ...
written 6.0 years ago by spandankeshav60
3
votes
2
answers
12k
views
2
answers
.Xyz To .Pdb Conversion
... Hi How can I convert .xyz file format to .pdb (protein data bank) file format? Is there easy way to convert? I tried with open babel in windows but I think there was something missing in my file (missing atoms) so that it didn't take that as an input. I am using windows machine! Thanks!javascript: d ...
pdb coordinates conversion written 6.0 years ago by spandankeshav60
0
votes
1
answer
1.9k
views
1
answers
Comment: C: How To Study The Characteristics Of Neighboring Genes (Of A Query) Of A Bacteria
... Actually, Both! ...
written 6.0 years ago by spandankeshav60
2
votes
1
answer
1.9k
views
1
answer
How To Study The Characteristics Of Neighboring Genes (Of A Query) Of A Bacterial Species?
... Hi, I am trying to analyze the function of certain genes along with the predefined characteristics (if any), which locates nearby of the query gene (neighboring genes may be 5 genes forward and backwards necessarily from the query) of bacteria species (mainly streptomyces species) in a whole genome. ...
genes written 6.0 years ago by spandankeshav60 • updated 6.0 years ago by Alex Reynolds29k
0
votes
3
answers
3.5k
views
3
answers
Comment: C: How To Download The16S Rdna Sequences Of All The Bacterial Species?
... Thanks a lot Asaf. It really helped. Cheers! ...
written 6.1 years ago by spandankeshav60
5
votes
3
answers
3.5k
views
3
answers
How To Download The16S Rdna Sequences Of All The Bacterial Species?
... I would like to download all the possible 16S rDNA sequences of bacterial species only. I tried Ribosomal Database Project (RDP) but I think it could be done only manually. I would like to donwload at once. So, is there any way to download all together at once? ...
written 6.1 years ago by spandankeshav60 • updated 6.1 years ago by Daniel3.7k
0
votes
0
answers
3.1k
views
0
answers
How To Deal With The Sequence Divergence?
... I have done the sequence alignment task of nearly 550 sequences of bacterial species by using Seaview program but while creating a phylogenetic tree from the same software it says that the sequences are too divergence. "Are they aligned?" Yes, I already did the alignment though. I don't want to redu ...
written 6.1 years ago by spandankeshav60
10
votes
8
answers
2.4k
views
11 follow
8
answers
Phylogenetic Tree
... Hello, Could anyone suggest the good phylogenetic tree reading program (Where I can manually sketch/write something that I want)? Thanks! ...
phylogenetics tree parser written 6.9 years ago by spandankeshav60 • updated 3.0 years ago by curiousbiologist40

Latest awards to spandankeshav

Popular Question 4.7 years ago, created a question with more than 1,000 views. For Phylogenetic Tree
Popular Question 5.2 years ago, created a question with more than 1,000 views. For .Xyz To .Pdb Conversion
Popular Question 5.5 years ago, created a question with more than 1,000 views. For Best Genome Browser?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1819 users visited in the last hour