User: ishackm

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ishackm30
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Posts by ishackm

<prev • 17 results • page 1 of 2 • next >
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How to use GEO2R and R to do the following?
... Hi all, I have the following GEO2R datasets. They are actually two datasets where they report gene expression profiles of laser micro dissected tumour (ie malignant cells) vs stroma (ie non-malignant cells which can be immune cells and fibroblasts) https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?a ...
R written 2 days ago by ishackm30
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How to embed the Genoverse Genome browser in my website
... Hi all, I am very new to this I would like to embed the Genovese genome browser into my website. I used to the HTML code that they recommended but when do it, I get a blank page, I just copied the html code from the following link on my html editor. I get a blank screen. http://wtsi-web.github. ...
genome embed html written 8 weeks ago by ishackm30
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How to get full list of human Protein Kinases and Kinase Inhibitors?
... Hi all, I would like to know please where I can get the full list of human protein kinases and their associated kinase inhibitors. I know kinase inhibitors can inhibit many protein kinases and vice versa?. Is there an excel file or such? Many Thanks, Ish ...
database kinase inhibitors written 9 weeks ago by ishackm30 • updated 9 weeks ago by Pierre Lindenbaum118k
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Comment: C: How to find the relationship between gene expression data of various group?
... Thanks a lot, Kevin once again. Its much clearer now. ...
written 3 months ago by ishackm30
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Comment: C: How to find the relationship between gene expression data of various group?
... Thanks a lot, Kevin. Is it also possible to visualise the relationship with this data also? ...
written 3 months ago by ishackm30
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How to find the relationship between gene expression data of various group?
... Hi all, I have a Geoquery Dataset, which has many groups (A,B,C,D,E). They all have gene expression data. How can I see the relationship between them on R? Many Thanks, Ish ...
gene R expression written 3 months ago by ishackm30 • updated 3 months ago by Kevin Blighe39k
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Comment: C: How can I find the the helixID and length of each helix in a PDB file please
... f=open('5ogb.pdb') lines=f.readlines() print lines[337] print lines[338] print "helixID= AA2" How can I modify the code so it can print the following please? : the helix id of each helix and the length, in a list sheetID, number of strands and the total number of residues, also a list. ...
written 4 months ago by ishackm30
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Comment: C: How can I find the the helixID and length of each helix in a PDB file please
... Thank you very much, the documentation is very confusing to me. Thank you also for the explanation for the different lines. ...
written 4 months ago by ishackm30
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Comment: C: How can I find the the helixID and length of each helix in a PDB file please
... Hi Natasha, Can you post a screenshot of it, please? I am very new to this thanks, Ish ...
written 4 months ago by ishackm30
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How can I find the the helixID and length of each helix in a PDB file please
... Hi everyone, I would like to find the helix ID and the length of each helix in the following PDB file: https://files.rcsb.org/view/5O5Z.pdb I can't seem to find it all. Many Thanks, Ish ...
gene protein written 4 months ago by ishackm30

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