User: shixiang1994wang

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Posts by shixiang1994wang

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Mapping genomic coordinates to protein-relative coordinates
... like [this function][1], but I want to find hg38 other than ensembl version annotation. [1]: https://www.bioconductor.org/packages/3.7/bioc/vignettes/ensembldb/inst/doc/coordinate-mapping.html#3_mapping_genomic_coordinates_to_protein-relative_coordinates ...
written 12 weeks ago by shixiang1994wang0
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Comment: C: Mapping genomic coordinates to protein-relative coordinates
... The function can translate DNA to Protein sequence, but I am looking for a translation which will think about the location of DNA sequence. ...
written 3 months ago by shixiang1994wang0
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Mapping genomic coordinates to protein-relative coordinates
... How to translate mutations in genome/exome to string of amino acid, with amino acid resulting from the mutation centrally situated. ...
gene R sequence rna-seq snp written 3 months ago by shixiang1994wang0 • updated 3 months ago by arta480
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Comment: C: Blast database error: No alias or index file found for protein database [swisspr
... Why it works? Can you provide some links or documentation to learn these commands? ...
written 3 months ago by shixiang1994wang0
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How to use DNAcopy package to analyze Affymetrix SNP array?
... Hello, I find TCGA project using [DNAcopy](https://bioconductor.org/packages/release/bioc/html/DNAcopy.html) to analyze their SNP6.0 data, so I wanna use this package to preprocess Affymetrix SNP array (CEL files) downloaded from GEO database like them. I am confused that DNAcopy documentation tell ...
R bioconductor copynumber snp cnv written 3 months ago by shixiang1994wang0 • updated 3 months ago by Eric T.2.2k

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