User: Shixiang

gravatar for Shixiang
Shixiang40
Reputation:
40
Status:
New User
Location:
Shanghai
Website:
http://www.shixiangwan...
Twitter:
ShixiangWang
Last seen:
5 months ago
Joined:
1 year, 5 months ago
Email:
s***************@gmail.com

Posts by Shixiang

<prev • 26 results • page 1 of 3 • next >
0
votes
2
answers
21k
views
2
answers
Comment: C: Calculating TPM from featureCounts output
... What's the meaning of "meanFragmentLength", could you give an example or more description? ...
written 7 months ago by Shixiang40
0
votes
4
answers
8.1k
views
4
answers
Answer: A: Visualization Of Cnv With Genomic Coordinates In R Ggplot2 Or Ggbio
... copynumber package maybe a good option, please see http://127.0.0.1:11794/library/copynumber/doc/copynumber.pdf ...
written 7 months ago by Shixiang40
0
votes
3
answers
7.5k
views
3
answers
Comment: C: A Quick Way To View Or Check The Order Of Chromosome In Bam File
... May I ask what the difference between three order ways? ...
written 7 months ago by Shixiang40
0
votes
17
answers
32k
views
17
answers
Answer: A: Gene Fusion Detection: Rna-Seq Data
... You can take a look at https://www.nature.com/articles/srep21597 ...
written 8 months ago by Shixiang40
0
votes
0
answers
1.2k
views
0
answers
Comment: C: how to normalize chromosome arms?
... I also have this question ...
written 9 months ago by Shixiang40
0
votes
1
answer
525
views
1
answers
Comment: C: Are TCGA data from UCSC cancer browser and TCGAbiolinks different?
... the legacy TCGA data came from hg19 version and TCGA data from the GDC now use hg38 version. therefore, it will have some difference. ...
written 9 months ago by Shixiang40
2
votes
5
answers
27k
views
5
answers
Answer: A: How Can I Get The Human Chromosome Centromere Position And Chromosome Length In
... I am also looking for this, and I find all what we need are included in package GWASTools https://www.rdocumentation.org/packages/GWASTools/versions/1.18.0/topics/centromeres ...
written 9 months ago by Shixiang40
0
votes
5
answers
27k
views
5
answers
Comment: C: How Can I Get The Human Chromosome Centromere Position And Chromosome Length In
... However, hg38 version cannot find centromeres in this way ...
written 9 months ago by Shixiang40
0
votes
1
answer
8.0k
views
1
answers
Comment: C: TCGA CNV Files
... Hello, I want to know how TCGA get the "nocnv" file. I download "masked copy number" data from TCGA, it says "Masked copy number segments are generated with the same method except that a filtering step is performed that removes Y chromosome and probe sets that were previously indicated to have freq ...
written 9 months ago by Shixiang40
0
votes
3
answers
21k
views
3
answers
Comment: C: Protocol To Downlad TCGA Data From GDC
... Does someone know how to fix this error? 92% [##########################ERROR: Max retries exceeded.:02:27 16.23 MB/s ERROR: Max retries exceeded. ERROR: Max retries exceeded. ERROR: Max retries exceeded. ...
written 9 months ago by Shixiang40

Latest awards to Shixiang

Supporter 12 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1714 users visited in the last hour