User: devarora

gravatar for devarora
devarora240
Reputation:
240
Status:
Trusted
Location:
SouthKorea
Scholar ID:
Google Scholar Page
Last seen:
4 hours ago
Joined:
2 years, 8 months ago
Email:
d*******@hotmail.com

So many questions

In brief..looking for answers..!!

Currently, My primary goal is to analyze large scale genomic data. I love exploring and analyzing VCF files.

My top strengths are teamwork, time management, and analytical skills with willingness to work on different projects. 

I love Python and R programming and Improving my skills.

Posts by devarora

<prev • 105 results • page 1 of 11 • next >
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Comment: C: how to choose hub genes in wgcna
... This paper could help you regarding hub gene identification by R package (dhga) [hub gene identification][1] [1]: https://pubmed.ncbi.nlm.nih.gov/28056073/ ...
written 6 days ago by devarora240
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Comment: C: How to plot figure?
... I am also assuming they extracted certain coordinates and made this heatmap. I will try this with our data and if have any positive development will post the same. Thankyou so much. ...
written 11 days ago by devarora240
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Comment: C: How to plot figure?
... Yes, I have the data and able to generate part (a). I Would like to ananlyze how they plotted part (b) and mapped all the breeds with the selected region. In this regard, any lead would be a great help or any tool that can plot such diversify information. ...
written 12 days ago by devarora240
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How to plot figure?
... While going through a research article I found a self explanatory figure and willing to perform similar task. We have done some work and want to map certain identified genes. I am interested in [research article][1] figure 4 or 5. Please provide some lead how can I achieve my goal in this regards. ...
vcf wgs fst plot written 12 days ago by devarora240 • updated 12 days ago by genomax91k
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Comment: C: Difference between padj and FDR
... Benjamini and Hochberg (**BH**) defined the concept of FDR and created an algorithm to control the expected FDR below a specified level in a list of independent **p.values**. As mentioned by @andres.firrincieli DESeq2 adjust p.value by **BH** algorithm and @i.sudbery clearly explain and @ATpoint alr ...
written 4 weeks ago by devarora240
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Answer: A: How does Linear regression works in gene-set analysis?
... Indeed one should know why they use such method before executing the work. For the above query, Why linear model was used? Here is a relatable link [Introduction to Linear Regression][1]. There in motivation section you will find *"but by looking at the plot above he deduces that the position should ...
written 7 weeks ago by devarora240
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Comment: C: Combining VCF files using GATK
... There was indexing issue from the missing combining files. I cross checked and indexed those file with bgzip -c missing_vcf.vcf > missing_vcf.vcf.gz tabix -p vcf missing_vcf.vcf.gz And re-run them with all file combined successfully. ...
written 7 weeks ago by devarora240
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Answer: A: How to convert folder containing .fna.gz to normal files
... I hope this will work. # Rename all *.fna to *.fasta for f in *.fna; do mv -- "$f" "${f%.fna}.fasta" done Or you can try find . -name '*.fna' -exec rename 's/\.fna$/.fasta/' \{} \; ...
written 9 weeks ago by devarora240
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Answer: A: How to convert folder containing .fna.gz to normal files
... Go to the directory and follow the command..:) find . -name ".fna.gz" |xargs -n 1 gunzip ...
written 9 weeks ago by devarora240
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Geneid between regions of chromosome
... I am having similar query [Ids between regions][1]. For small batches the stack overflow approach works fine but if I want to print with large list it ends up with different errors. such: "failed to load http resource", "Failed to load external entity". I am fixing one other error arise. Is there a ...
ensembl biomart vep geneid written 10 weeks ago by devarora240 • updated 10 weeks ago by Ben_Ensembl1.6k

Latest awards to devarora

Centurion 4 weeks ago, created 100 posts.
Autobiographer 6 months ago, has more than 80 characters in the information field of the user's profile.
Supporter 8 months ago, voted at least 25 times.
Scholar 8 months ago, created an answer that has been accepted. For A: How to do chromosome painting?
Scholar 8 months ago, created an answer that has been accepted. For A: How to do chromosome painting?
Scholar 8 months ago, created an answer that has been accepted. For A: How to do chromosome painting?
Scholar 9 months ago, created an answer that has been accepted. For A: How to do chromosome painting?
Popular Question 9 months ago, created a question with more than 1,000 views. For WGCNA TOM calculation time

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