User: devarora

gravatar for devarora
devarora150
Reputation:
150
Status:
Trusted
Location:
SouthKorea
Scholar ID:
Google Scholar Page
Last seen:
6 hours ago
Joined:
2 years, 5 months ago
Email:
d*******@hotmail.com

So many questions

In brief..looking for answers..!!

Currently, My primary goal is to analyze large scale genomic data. I love exploring and analysing VCF files.

My top strengths are teamwork, time management and analytical skills with willing to work on different project. 

I love Python and R programming and Improving my skills.

Philosophy: Solution co-exist with problem ~~BhagwatGeeta. 

My Ultimate goal is to decode cell using Machine Learning Approaches (Work in progress). 

Posts by devarora

<prev • 94 results • page 1 of 10 • next >
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Positive selection population identification using xpehh
... I am using Rehh package for identification of positively selected genes from our study. I am using the following script but confused with right reference. > ies2xpehh( >scan_pop1, >scan_pop2, >popname1 = NA, >popname2 = NA, >min_nhaplo = NA, >standardize = TRUE, include_freq = ...
xpehh R rehh selective sweep population genetics written 13 days ago by devarora150
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Comment: C: Convert Logp value to P value
... Dear Sir, I tried the above method but it leads to P-value greater than 1. ...
written 25 days ago by devarora150
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Comment: C: Convert Logp value to P value
... It works smoothly. Thank you so much. ...
written 25 days ago by devarora150
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Convert Logp value to P value
... Dear All, I am having trouble with P value conversion for my data. I tried follwoing [Biostar Post][1] but couldnot understand how I can get the P value out of LogP value or -log10 (p-value). Please share your experience I can get P value out of the data in either R or excel. > rsid CHR ...
R csv P snp logp written 26 days ago by devarora150 • updated 25 days ago by RamRS28k
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How can I identify gene related to locus of certain chromosome.
... We have identified certain locus id e.g. **rs6054257**. Now our aim is to identify gene related to id on respective chromosome. I am looking for the possible way but cant find any solution. Please share your experience I will be highly thankful to you. ...
vcf gene locus selective sweep wgs written 8 weeks ago by devarora150
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Comment: C: VCF file ID missing
... Thankyou for the quick response. I tried following this but ended up with no solution. Finally, I found bcftools annotate [How to add rsID in vcf][1] seems worked for me. I am now going to do post analysis hope this works for me. Thank you again for the help. [1]: https://www.biostars.org/p/3930 ...
written 9 weeks ago by devarora150
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VCF file ID missing
... I am working with WGS data and ran GATK pipeline. We are currently studying selective sweep gene study and I encountered this issue of missing id information. The ID position for each chromosome is **.** When we assumed it would be **rs5254666** like information. Please share your experience what ne ...
vcf assembly snp wgs written 10 weeks ago by devarora150
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Answer: A: Download problem of FASTQ files from the European Nucleotide Archive (ENA) using
... There is some issue with the ENA server. I am also trying to download but even wget seems not working. ...
written 12 weeks ago by devarora150
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Answer: A: 3 d protein structure predcition
... First Identify the template and blast against the database (BLASTp). Check the coverage, evalue, identity if similarity found more that 40% choose the top hits from the blast results. Choose 5+ template (prefer) and align them to query sequence. (These step performed in Modeller) Following alignment ...
written 3 months ago by devarora150
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Comment: C: Assembly quality analysis
... I agree my post was not exactly clear. I tried to explain but gone in different direction. I will try to pinpoint the issue from now onwards. Thanks ...
written 3 months ago by devarora150

Latest awards to devarora

Autobiographer 3 months ago, has more than 80 characters in the information field of the user's profile.
Supporter 5 months ago, voted at least 25 times.
Scholar 5 months ago, created an answer that has been accepted. For A: How to do chromosome painting?
Scholar 5 months ago, created an answer that has been accepted. For A: How to do chromosome painting?
Scholar 5 months ago, created an answer that has been accepted. For A: How to do chromosome painting?
Scholar 6 months ago, created an answer that has been accepted. For A: How to do chromosome painting?
Popular Question 7 months ago, created a question with more than 1,000 views. For WGCNA TOM calculation time

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