... I am using Rehh package for identification of positively selected genes from our study. I am using the following script but confused with right reference.
>popname1 = NA,
>popname2 = NA,
>min_nhaplo = NA,
>standardize = TRUE,
include_freq = ...
... Dear All,
I am having trouble with P value conversion for my data. I tried follwoing [Biostar Post] but couldnot understand how I can get the P value out of LogP value or -log10 (p-value). Please share your experience I can get P value out of the data in either R or excel.
> rsid CHR ...
written 26 days ago by
devarora • 150
25 days ago by
RamRS ♦ 28k
... We have identified certain locus id e.g. **rs6054257**. Now our aim is to identify gene related to id on respective chromosome. I am looking for the possible way but cant find any solution. Please share your experience I will be highly thankful to you. ...
... I am working with WGS data and ran GATK pipeline. We are currently studying selective sweep gene study and I encountered this issue of missing id information. The ID position for each chromosome is **.** When we assumed it would be **rs5254666** like information. Please share your experience what ne ...
... There is some issue with the ENA server. I am also trying to download but even wget seems not working. ...
... First Identify the template and blast against the database (BLASTp). Check the coverage, evalue, identity
if similarity found more that 40% choose the top hits from the blast results.
Choose 5+ template (prefer) and align them to query sequence. (These step performed in Modeller)
Following alignment ...