User: eDNAuRNA

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eDNAuRNA20
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Posts by eDNAuRNA

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Comment: C: Comparing values of a column if it falls between values of two columns of a diff
... I accepted answer for the example data given. However, I am still struggling with the real data. ...
written 4 weeks ago by eDNAuRNA20
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Comment: C: Comparing values of a column if it falls between values of two columns of a diff
... Hey Kevin, I am trying to do it in R as well but I think there is a common problem which is causing this not to work with real dataset. My apologies. With example data it works on Mac but its not working with real dataset. I realized that the real dataset has many regions in `A.txt` which doesn't ov ...
written 4 weeks ago by eDNAuRNA20
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Comment: C: Comparing values of a column if it falls between values of two columns of a diff
... My apologies. You are absolutely right. With example data it works 100%. But its not working with real dataset. I realized that the real dataset has many regions in `A.txt` which doesn't overlap with the `B.txt`. Please note that in real dataset, `A.txt` has about 10,000 rows while B.txt has about ...
written 4 weeks ago by eDNAuRNA20
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Comment: C: Comparing values of a column if it falls between values of two columns of a diff
... Didn't work. "*Error in setkeyv(B, c("V2", "V3")) : some columns are not in the data.table: V2*" Thanks though. ...
written 5 weeks ago by eDNAuRNA20
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Comment: C: Comparing values of a column if it falls between values of two columns of a diff
... I am using RedHat Enterprise Linux 7 and yes the files are tab -delimited. Will it work on mac? Thanks for the help again. Really appreciate and looking forward to solve this problem. ...
written 5 weeks ago by eDNAuRNA20
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Comment: C: Comparing values of a column if it falls between values of two columns of a diff
... Thanks Rashedul, however bedtools might not work because of redundancy. ...
written 5 weeks ago by eDNAuRNA20
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Comment: A: Comparing values of a column if it falls between values of two columns of a diff
... Thanks Kevin, That was quick. I tried but it didn't work for me, that's weird. I have exact same data sets and i copied your code. It didn't reproduce the product you have shown. Can you please take another look? Your all assumptions are correct except one thing I would like to clarify that I also ...
written 5 weeks ago by eDNAuRNA20
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Comparing values of a column if it falls between values of two columns of a different data set and creating new column
... Hi everyone, I have two unequal data sets. A data set V1 V2 V3 6 42721754 42721769 6 42721757 42721772 6 42721760 42721775 6 42721763 42721778 6 42721766 42721781 6 42721769 42721784 6 42721772 42721787 6 42721775 42721790 B data set V2 ...
R awk linux written 5 weeks ago by eDNAuRNA20 • updated 5 weeks ago by zx87548.4k
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Comment: C: Querying Gemini database by using genomic coordinates from a bed file.
... Hi Fin, You are amazing. Its working perfectly :) Thanks a bunch. Have a great weekend. Best, ...
written 12 months ago by eDNAuRNA20
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Comment: C: Querying Gemini database by using genomic coordinates from a bed file.
... Hi Fin, thanks a bunch. This worked like a charm. I need a quick modification. The query shouldn't include "**chr**" from the bed file. The code you shared includes "**chr**" in the output and it won't work like this. Can you please suggest how to avoid adding "**chr**" in the output? Right now fol ...
written 12 months ago by eDNAuRNA20

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