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Posts by rizky_dsatrio
... I want to do GWAS in rice. There are several SNP data set from 3000 rice accessions provided by IRRI (http://snp-seek.irri.org) i.e: 1. all (32M) 2. base (18M) 3. filtered (4.8M) 4. core (404k) However, I only use 300 accessions from those. Which data set I should use for genotyping in my GWAS anal ...
... If we want to do GWAS in agriculture, which is the better option among these cases: 1. I get 200 whole-genome data and also 200 plant accessions. I use 200 whole-genome data for SNP-calling and GWAS analysis. 2. I get 2000 whole-genome data, but I only have 200 plant accessions. I use 2000 whole-g ...
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