User: ShahdEzzeldin

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Posts by ShahdEzzeldin

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How to get gene name from Metahit / IGC data
... Hi, Does anyone know how could I get gene name from Metahit and/or Integrated gene catalog (IGC) data? Such databases use unique gene name (e.g. MH0103_GL0048897, V1.FI15_GL0108491) unlike common names used in public databases. So any idea how could I retrieve common gene name from those uniques ...
metahit igc metaproteomics written 10 months ago by ShahdEzzeldin0
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Answer: A: Help obtaining metahit metadata
... I still face the same problem of unique gene naming, not only with the metahit data but also the integrated gene catalog (IGC). They use unique gene name (e.g. MH0321_GL0035043) unlike public databases. So how did you manage to get common gene name from those unique names? Thanks! ...
written 10 months ago by ShahdEzzeldin0
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Convert Protein names to Gene names/symbols
... Hi All, I have a list of proteins names and their COG accession number, generated from a metaproteomics software. How could I convert them to gene names or symbols? Here an example of my list: COG3968 Glutamine synthetase type III(3012) COG0085 DNA-directed RNA polymerase, beta subunit/140 kD ...
gene proteins written 16 months ago by ShahdEzzeldin0 • updated 16 months ago by michael.ante3.3k

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