User: Giovanni.madrigal12

Reputation:
10
Status:
New User
Location:
Last seen:
13 hours ago
Joined:
3 months, 2 weeks ago
Email:
G******************@yahoo.com

Posts by Giovanni.madrigal12

<prev • 9 results • page 1 of 1 • next >
0
votes
2
answers
4.3k
views
2
answers
Comment: C: Multisample VCF file to Structure file format ?
... Thank you very much! That seemed to do the trick. You have saved me a lot of time and headache. I appreciate your help. ...
written 20 days ago by Giovanni.madrigal1210
0
votes
2
answers
4.3k
views
2
answers
Comment: C: Multisample VCF file to Structure file format ?
... Thank you for the response. I have replaced the "." with zeros within the POS column; however, I am now receiving this error: Error: Line 2 of .vcf file has an invalid GT field. Looking at the head of the file through the terminal is a bit difficult due to the top row being crunched up, but in a sp ...
written 20 days ago by Giovanni.madrigal1210
0
votes
2
answers
4.3k
views
2
answers
Comment: C: Multisample VCF file to Structure file format ?
... Hello chrchang523, I know that it has been quite a while since this post, but I am trying to run this method with my vcf file; however, I keep getting an error: Error: Invalid bp coordinate on line 1 of .bim file. I removed the logical information from the original vcf file as a means of improvin ...
written 20 days ago by Giovanni.madrigal1210
0
votes
1
answer
201
views
1
answers
Comment: C: DiscoSNP-RAD: using 1SNP_by_cluster.py
... I am also having this same problem. Please let me know if you find a solution to this issue. Thank you in advance! Sincerely, Gio ...
written 3 months ago by Giovanni.madrigal1210
1
vote
1
answer
168
views
1
answer
Makeblastdb Issue Buffer Overflow
... I am running into a makeblastdb issue. The error I am receiving is: *** buffer overflow detected ***: makeblastdb terminated ======= Backtrace: ========= I do not know what the issue is. I have run this program with other fasta files and had no issues with it. Here is the command I am running along ...
fasta database blast written 3 months ago by Giovanni.madrigal1210 • updated 3 months ago by genomax50k
1
vote
1
answer
331
views
1
answers
Answer: A: DiscoSnp++ in RADtags
... Hello Marianna, Have you looked into DiscoSNP-RAD? It seems like the authors have adapted their DiscoSnp++ application towards processing RAD-seq data. The paper can be found here: https://www.biorxiv.org/content/early/2017/11/09/216747 Hope this helps, Giovanni Madrigal ...
written 3 months ago by Giovanni.madrigal1210
0
votes
1
answer
192
views
1
answers
Comment: C: DiscoSNP-RAD to Structure
... Hello Dr. Gauthier, Thank you for the information! This is extremely helpful. I appreciate your time and help. ...
written 3 months ago by Giovanni.madrigal1210
2
votes
1
answer
192
views
1
answer
DiscoSNP-RAD to Structure
... Hello all, I would appreciate some advice. I have generated SNP sequences using DiscsoSNP-RAD and figured out a pipeline to import the data into STRUCTURE to look at population structures. I am trying to perform a similar experiment as Gauthier et al. did in their paper DiscoSnp-RAD: de novo detect ...
rad-seq discosnp structure snp written 3 months ago by Giovanni.madrigal1210 • updated 3 months ago by Jeremy Gauthier20
3
votes
2
answers
230
views
2
answers
New To DiscoSnp-RAD
... Dear all, I am relatively new to bioinformatics and coding. Looking the DiscoSnp's supplementary data, the commands seem pretty straight forward; however, I just can't seem to wrap my head around the command where the fof.txt was created. For the experiment in the DIscoSnp++ paper, the command was ...
discosnp snp written 3 months ago by Giovanni.madrigal1210 • updated 3 months ago by pierre.peterlongo820

Latest awards to Giovanni.madrigal12

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1060 users visited in the last hour