User: adam.carol

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Posts by adam.carol

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Comment: C: Looking for reputable tool to find low complexity regions in FASTQ or BAM files
... I used masked fasta files to make genome alignments using LASTZ, but I still have a lot of repetitive regions. I wonder if there is any algorithm I can use to remove this repetitive regions in the MAF files that resulted from the alignments. ...
written 3 months ago by adam.carol0
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Filtering repetitive sequences from MAF files
... Hello! Is there any available tool to remove repetitive sequences from genome alignments (MAF format)? The fasta files used in the alignments were downloaded from NCBI and were already masked, but for some reason I still have a lot of repetitive sequences in the resulting MAF files (maybe microsate ...
sequence alignment written 3 months ago by adam.carol0

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