User: BELA

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BELA0
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Posts by BELA

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Read .txt file with Plink - Error
... Hey! Thanks for your patience! I go always over: shift key& right mouse click to open the folder/ command window. and directly in there I have my data and write my output file to this. This should be okay, right? But then I should not use this ../ The write access should not be the problem as I ...
written 3 months ago by BELA0
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Comment: C: Read .txt file with Plink - Error
... Yeah right.. Hmm I´ve tried it on 2 different computers, same issue. But then there remains also the question why it can´t even find the txt files in some cases... I tried things like ./ ../ before and so on, but as I said it often says that there are no files... Do you have any other idea what I ca ...
written 3 months ago by BELA0
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Comment: C: Read .txt file with Plink - Error
... and here is one example from one txt file... HR SNP BP A1 A2 INFO OR SE P 1 rs202152658 751343 A T 0.884 1.03118 0.0221 0.1654 1 rs143225517 751756 T C 0.884 0.96977 0.0221 0.1654 ...
written 3 months ago by BELA0
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Comment: C: Read .txt file with Plink - Error
... First: Really thank you for your help! I wanted to use this GWAS data: https://ctg.cncr.nl/software/summary_statistics (I think it is easiest for you to see when you have a look at that) I renamed some headers, so that they are "SNP" and "P", like it is needed for Plink (done that in R). My study d ...
written 3 months ago by BELA0
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Comment: C: Read .txt file with Plink - Error
... Hey! Thanks for your answer. But it is strange, I tried different things and sometimes it works and in most cases not! And everytime when plink reads the txt, the program crashes. Has anyone any idea what I can do? I need this GWAS txt data to clump.... ...
written 3 months ago by BELA0
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Read .txt file with Plink - Error
... Hey! I have problems to read a .txt file in Plink (I am completely new to this software). I want to clump SNPs and used the following code: plink --bfile ../Post --clump IQ.txt --clump-kb 250 --clump-r2 0.1 --clump-p1 0.5 --clump-p2 0.005 --out Final Post is my data file (.bed, .fam, .bim) an ...
plink written 3 months ago by BELA0

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