User: kalyanimeha

gravatar for kalyanimeha
kalyanimeha30
Reputation:
30
Status:
New User
Location:
New Delhi INDIA
Last seen:
2 years, 1 month ago
Joined:
2 years, 2 months ago
Email:
k**********@gmail.com

Posts by kalyanimeha

<prev • 27 results • page 1 of 3 • next >
0
votes
1
answer
1.4k
views
1
answers
Comment: C: Microarray Meta Analysis
... Helpful. I have different GPL file of GEO dataset. I am an M.Sc student. I am not getting how to start metanalysis with the help of R package. Data Set= GSE35503-Agilent GSE35503-Affymetrix Human Genome GSE16186-Sentrix HumanRef-8 v2 Expression BeadChip GSE88947-Agilent-021529 GSE86885-Illumi ...
written 2.1 years ago by kalyanimeha30
7
votes
1
answer
1.4k
views
1
answer
Microarray Meta Analysis
... How to perform the meta-analysis of 15 GEO dataset in R. Is there any good and simple package which can be understood easily by me. ...
R microaaray meta-analysis rna-seq written 2.1 years ago by kalyanimeha30 • updated 2.1 years ago by cpad011213k
7
votes
1
answer
2.0k
views
7 follow
1
answer
ClusterProfiler Ontology Bar plotting
... I am doing gene ontology enrichment with cluterprofiler package, and I got the result but when I plotting barplot (10000 descriptions) it's difficult to read or identify the name in the plot, is there any method to remove those descriptions which don't have any gene name. Command Line >gg ...
dose guangchuang yu reactomepa clusterprofiler written 2.2 years ago by kalyanimeha30 • updated 19 months ago by zx87549.2k
0
votes
0
answers
1.4k
views
0
answers
Comment: C: Reactome Pathway Analysis
... R Studio Version-1.1.442 R Version - 3.4.4 I am installing packages by command available in Bioconductor or should I roll back to an older version of R Studio/R ...
written 2.2 years ago by kalyanimeha30
2
votes
0
answers
1.4k
views
0
answers
(Closed) Reactome Pathway Analysis
... I am getting this two errors. Can someone give quick solution for this error? I had also installed latest package, and still getting this error. >library(ReactomePA) Error: package or namespace load failed for ‘ReactomePA’: object ‘netplot’ is not exported by 'namespace:DOSE' >yy = en ...
guangchuangyu reactomepa rna-seq enrichpathway written 2.2 years ago by kalyanimeha30
0
votes
1
answer
1.8k
views
1
answers
Comment: C: Pathways Enrichment Analysis.
... Still getting an error. > library(enrichplot) Error: package or namespace load failed for ‘enrichplot’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): namespace ‘DOSE’ 3.4.0 is already loaded, but >= 3.5.1 is required > emapplot(yy) ...
written 2.2 years ago by kalyanimeha30 • updated 2.1 years ago by RamRS27k
0
votes
1
answer
1.8k
views
1
answers
Comment: C: Pathways Enrichment Analysis.
... I have downloaded the zipfile and extracted file saved in r directory, but when calling the library its showing error. > library(enrichplot) Error: package or namespace load failed for ‘enrichplot’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): ...
written 2.2 years ago by kalyanimeha30 • updated 2.2 years ago by RamRS27k
0
votes
1
answer
1.8k
views
1
answers
Comment: C: Pathways Enrichment Analysis.
... Getting error Warning message: package ‘enrichplot’ is not available (for R version 3.4.3) ...
written 2.2 years ago by kalyanimeha30
6
votes
1
answer
1.8k
views
6 follow
1
answer
Pathways Enrichment Analysis.
... I am trying to visualise the pathways map but getting some error? I Have already install ReactomePA Package. > emapplot(x) Error in emapplot(x) : could not find function "emapplot" ...
pathwaysenrichment reactomepa microarray rna-seq written 2.2 years ago by kalyanimeha30 • updated 2.2 years ago by Guangchuang Yu2.3k
0
votes
0
answers
515
views
0
answers
Differential Gene Analysis
... I am getting this error while calculating t-statistics and corresponding p-values by genefilter package. I have total 6 samples from GEO Site(GEO34747) > library(genefilter) > destats <- rowttests(exprs(gse),fac=SampleGroup) Error in rowcoltt(x, fac, tstatOnly, 1L) : Number of groups ...
limma rna-seq dge written 2.2 years ago by kalyanimeha30

Latest awards to kalyanimeha

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1195 users visited in the last hour