User: kalyanimeha

gravatar for kalyanimeha
kalyanimeha30
Reputation:
30
Status:
New User
Location:
New Delhi INDIA
Last seen:
1 year, 1 month ago
Joined:
1 year, 2 months ago
Email:
k**********@gmail.com

Posts by kalyanimeha

<prev • 27 results • page 1 of 3 • next >
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Comment: C: Microarray Meta Analysis
... Helpful. I have different GPL file of GEO dataset. I am an M.Sc student. I am not getting how to start metanalysis with the help of R package. Data Set= GSE35503-Agilent GSE35503-Affymetrix Human Genome GSE16186-Sentrix HumanRef-8 v2 Expression BeadChip GSE88947-Agilent-021529 GSE86885-Illumi ...
written 13 months ago by kalyanimeha30
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Microarray Meta Analysis
... How to perform the meta-analysis of 15 GEO dataset in R. Is there any good and simple package which can be understood easily by me. ...
R microaaray meta-analysis rna-seq written 13 months ago by kalyanimeha30 • updated 13 months ago by cpad011211k
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ClusterProfiler Ontology Bar plotting
... I am doing gene ontology enrichment with cluterprofiler package, and I got the result but when I plotting barplot (10000 descriptions) it's difficult to read or identify the name in the plot, is there any method to remove those descriptions which don't have any gene name. Command Line >gg ...
dose guangchuang yu reactomepa clusterprofiler written 14 months ago by kalyanimeha30 • updated 7 months ago by zx87547.3k
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Comment: C: Reactome Pathway Analysis
... R Studio Version-1.1.442 R Version - 3.4.4 I am installing packages by command available in Bioconductor or should I roll back to an older version of R Studio/R ...
written 14 months ago by kalyanimeha30
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(Closed) Reactome Pathway Analysis
... I am getting this two errors. Can someone give quick solution for this error? I had also installed latest package, and still getting this error. >library(ReactomePA) Error: package or namespace load failed for ‘ReactomePA’: object ‘netplot’ is not exported by 'namespace:DOSE' >yy = en ...
guangchuangyu reactomepa rna-seq enrichpathway written 14 months ago by kalyanimeha30
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Comment: C: Pathways Enrichment Analysis.
... Still getting an error. > library(enrichplot) Error: package or namespace load failed for ‘enrichplot’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): namespace ‘DOSE’ 3.4.0 is already loaded, but >= 3.5.1 is required > emapplot(yy) ...
written 14 months ago by kalyanimeha30 • updated 13 months ago by RamRS21k
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Comment: C: Pathways Enrichment Analysis.
... I have downloaded the zipfile and extracted file saved in r directory, but when calling the library its showing error. > library(enrichplot) Error: package or namespace load failed for ‘enrichplot’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): ...
written 14 months ago by kalyanimeha30 • updated 14 months ago by RamRS21k
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Comment: C: Pathways Enrichment Analysis.
... Getting error Warning message: package ‘enrichplot’ is not available (for R version 3.4.3) ...
written 14 months ago by kalyanimeha30
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Pathways Enrichment Analysis.
... I am trying to visualise the pathways map but getting some error? I Have already install ReactomePA Package. > emapplot(x) Error in emapplot(x) : could not find function "emapplot" ...
pathwaysenrichment reactomepa microarray rna-seq written 14 months ago by kalyanimeha30 • updated 14 months ago by Guangchuang Yu2.1k
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Differential Gene Analysis
... I am getting this error while calculating t-statistics and corresponding p-values by genefilter package. I have total 6 samples from GEO Site(GEO34747) > library(genefilter) > destats <- rowttests(exprs(gse),fac=SampleGroup) Error in rowcoltt(x, fac, tstatOnly, 1L) : Number of groups ...
limma rna-seq dge written 14 months ago by kalyanimeha30

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