User: Morteza Hadizadeh
Morteza Hadizadeh • 10
- Reputation:
- 10
- Status:
- New User
- Location:
- Physiology Research Center, Institute of Basic and Clinical Physiology Sciences, Kerman University of Medical Sciences, Kerman, Iran
- Last seen:
- 1 day, 6 hours ago
- Joined:
- 1 year, 3 months ago
- Email:
- m***************@gmail.com
Posts by Morteza Hadizadeh
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... Hi everyone,
- Is it logical to analysis the gene co-expression network between samples with 3 repeats?
- In order to construct a biosynthesis gene co-expression network which one is more valid? Meta-Analysis result or individual study result.
I would be very pleased if you could guide me.
...
written 5 days ago by
Morteza Hadizadeh • 10
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C: gene IDs enrichment in plants
... Apologies for the delay in replying.
Thank you for valuable guide and introducing the site.
Our studied genes related to the tobacco plant, unfortunately, this database does not contain tobacco (in "Organism of Interest" section). If I insert genes that belong to tobacco and set "Organism of Intere ...
written 8 weeks ago by
Morteza Hadizadeh • 10
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C: gene IDs enrichment in plants
... Apologies for the delay in replying, I would appreciate your immediate attention to this matter.
Our data is gene IDs or spot IDs that obtained from microarray analysis, these IDs do not convert to gene symbol, on the other do not enrich by these databases.
Our plant is tobacco, this is not a model. ...
written 8 weeks ago by
Morteza Hadizadeh • 10
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... Hi every one,
Some databases such as DAVID, BioDBnet or Panther cannot convert or enriched most of plant gene IDs or microarray spot ID, could you please introduce me a package for identifying enrichment a list of genes in plants. Any suggestions?
Thanks a lot. ...
written 9 weeks ago by
Morteza Hadizadeh • 10
• updated
9 weeks ago by
Buffo • 1.6k
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... Hi everyone,
In microarray analysis, some plant platforms such as Nimble gene, have SPOT ID or GB ID. In databases like David, most of plants GB ID don't convert to gene symbol, could you please introduce me a specialty website or a package to obtain gene list from GB ID or SPOT ID?
I would be ve ...
written 9 weeks ago by
Morteza Hadizadeh • 10
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... Hi every one,
In GOPlot package, input file comes with a manually compiled sample dataset (EC).
Could you please guide me on how to create EC file?
Thanks a lot ...
written 3 months ago by
Morteza Hadizadeh • 10
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... Thank you so much for your guidance. ...
written 3 months ago by
Morteza Hadizadeh • 10
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... Mutual differential expression genes contain up and down-regulated genes. ...
written 3 months ago by
Morteza Hadizadeh • 10
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... Hi every one,
I have an expression matrix, the rows contain 550 mutual DEGs and columns contain 73 samples (550*73), samples are divided into 2 groups (control and case), 30 sample for control and 43 samples for the case.
I want to calculate Pearson's Correlation Coefficient for each group to const ...
written 3 months ago by
Morteza Hadizadeh • 10
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3 months ago by
biobiu • 90
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... I really appreciate your concern,
my question about meta-analysis was only a learning aspect.
...
written 3 months ago by
Morteza Hadizadeh • 10
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