User: morteza.hadizade
morteza.hadizade • 10
- Reputation:
- 10
- Status:
- New User
- Location:
- Physiology Research Center, Institute of Basic and Clinical Physiology Sciences, Kerman University of Medical Sciences, Kerman, Iran
- Last seen:
- 6 days, 11 hours ago
- Joined:
- 11 months, 1 week ago
- Email:
- m***************@gmail.com
Posts by morteza.hadizade
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Comment:
C: Timeout was reached
... Dear Kevin BligheIn,
I'm sorry for the delay in replying, your criticism is reasonable and correct, I apologize for this.
During microarray analysis, I encounter below error rafter loading GEOquery package.
> gset <- getGEO(dataset, GSEMatrix =TRUE, AnnotGPL=TRUE, destdir = "C:/R Database/TGF ...
written 3 months ago by
morteza.hadizade • 10
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... Hi,
Thank you so much for your valuable guidance, your answer was reasonable and accurate. ...
written 3 months ago by
morteza.hadizade • 10
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... Hi every one,
During microarray meta-analysis, I encounter below error.
# "anals” class is a list.
> es_res <- es_meta(anals, by_source = TRUE)
Error in quantile.default(x, probs = c(0.25, 0.75)) :
missing values and NaN's not allowed if 'na.rm' is FALSE
please guide me, which one is more ...
written 3 months ago by
morteza.hadizade • 10
• updated
10 weeks ago by
Jean-Karim Heriche ♦ 18k
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... Hi everyone
Sometimes in microarray analysis, “ex” matrix is contained any NA values, I remove NAs with “na.omit” command, after removing NAs from “ex” matrix, do I need to remove NAs from “gset”???
I would be very pleased if you could guide me.
gset <- getGEO(dataset, GSEMatrix =TRUE, Anno ...
written 6 months ago by
morteza.hadizade • 10
• updated
6 months ago by
ewre • 210
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... Hi everyone
How to solve Timeout was reached error: Connection timed out after 10000 milliseconds
Thanking you in anticipation. ...
written 6 months ago by
morteza.hadizade • 10
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... The table is complete, F-statistic is used for comparing more than two groups.
My question is that how to extract significant genes without FC?
or
Is "adj.P.Val" sufficient for analysis alone? ...
written 6 months ago by
morteza.hadizade • 10
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... No, F means F-statistic or Fisher statistic ...
written 6 months ago by
morteza.hadizade • 10
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300
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... Thank you for taking this into consideration. ...
written 6 months ago by
morteza.hadizade • 10
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5 follow
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... Hi everyone
Why do some microarray analysis without FoldChange (in the top table)?
How to extract up and down-regulated genes (with adj.P.Val and lack of FC)?
![enter image description here][1]
[1]: https://s33.postimg.cc/jzv0yfrv3/2018-07-27_004407.jpg ...
written 6 months ago by
morteza.hadizade • 10
• updated
6 months ago by
b.nota ♦ 6.2k
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... Dear R- Help
I installed the reshape2 package in RStudio and loading the library gives the following error.
Error: package or namespace load failed for ‘reshape2’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
object 'vI' not found.
How to fix this er ...
written 8 months ago by
morteza.hadizade • 10
• updated
8 months ago by
Devon Ryan ♦ 88k
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