User: Morteza Hadizadeh

Reputation:
10
Status:
New User
Location:
Physiology Research Center, Institute of Basic and Clinical Physiology Sciences, Kerman University of Medical Sciences, Kerman, Iran
Last seen:
1 day, 6 hours ago
Joined:
1 year, 3 months ago
Email:
m***************@gmail.com

Posts by Morteza Hadizadeh

<prev • 32 results • page 1 of 4 • next >
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gene co-expression network
... Hi everyone, - Is it logical to analysis the gene co-expression network between samples with 3 repeats? - In order to construct a biosynthesis gene co-expression network which one is more valid? Meta-Analysis result or individual study result. I would be very pleased if you could guide me. ...
gene rna-seq written 5 days ago by Morteza Hadizadeh10
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Comment: C: gene IDs enrichment in plants
... Apologies for the delay in replying. Thank you for valuable guide and introducing the site. Our studied genes related to the tobacco plant, unfortunately, this database does not contain tobacco (in "Organism of Interest" section). If I insert genes that belong to tobacco and set "Organism of Intere ...
written 8 weeks ago by Morteza Hadizadeh10
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Comment: C: gene IDs enrichment in plants
... Apologies for the delay in replying, I would appreciate your immediate attention to this matter. Our data is gene IDs or spot IDs that obtained from microarray analysis, these IDs do not convert to gene symbol, on the other do not enrich by these databases. Our plant is tobacco, this is not a model. ...
written 8 weeks ago by Morteza Hadizadeh10
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gene IDs enrichment in plants
... Hi every one, Some databases such as DAVID, BioDBnet or Panther cannot convert or enriched most of plant gene IDs or microarray spot ID, could you please introduce me a package for identifying enrichment a list of genes in plants. Any suggestions? Thanks a lot. ...
R written 9 weeks ago by Morteza Hadizadeh10 • updated 9 weeks ago by Buffo1.6k
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convert GB ID or SPOT ID to gene symbol in plant platforms
... Hi everyone, In microarray analysis, some plant platforms such as Nimble gene, have SPOT ID or GB ID. In databases like David, most of plants GB ID don't convert to gene symbol, could you please introduce me a specialty website or a package to obtain gene list from GB ID or SPOT ID? I would be ve ...
gene R written 9 weeks ago by Morteza Hadizadeh10
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Create an import file in GOPlot package
... Hi every one, In GOPlot package, input file comes with a manually compiled sample dataset (EC). Could you please guide me on how to create EC file? Thanks a lot ...
R written 3 months ago by Morteza Hadizadeh10
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Comment: C: Pearson's Correlation Coefficient and expression matrix
... Thank you so much for your guidance. ...
written 3 months ago by Morteza Hadizadeh10
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Comment: C: Pearson's Correlation Coefficient and expression matrix
... Mutual differential expression genes contain up and down-regulated genes. ...
written 3 months ago by Morteza Hadizadeh10
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Pearson's Correlation Coefficient and expression matrix
... Hi every one, I have an expression matrix, the rows contain 550 mutual DEGs and columns contain 73 samples (550*73), samples are divided into 2 groups (control and case), 30 sample for control and 43 samples for the case. I want to calculate Pearson's Correlation Coefficient for each group to const ...
R written 3 months ago by Morteza Hadizadeh10 • updated 3 months ago by biobiu90
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Comment: C: extract difference gene from two platform
... I really appreciate your concern, my question about meta-analysis was only a learning aspect. ...
written 3 months ago by Morteza Hadizadeh10

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