User: vkgaur25

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vkgaur2530
Reputation:
30
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New User
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Last seen:
2 weeks ago
Joined:
7 months, 4 weeks ago
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v*******@gmail.com

Posts by vkgaur25

<prev • 11 results • page 1 of 2 • next >
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Comment: C: Using data.matrix while reading raw counts from a csv file for DESeq2 analysis
... Problem solved. Thanks a lot ...
written 4 months ago by vkgaur2530
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Using data.matrix while reading raw counts from a csv file for DESeq2 analysis
... Hi all, I have my raw read counts in a csv file and while doing DESEq2 I read it like- calidata<-read.csv("/Users/XXX/Desktop/xxx/TT48.csv", header=TRUE, row.names = 1) mat_data <- data.matrix(calidata) and then proceeded with DESeq2. If I use same input file but in a tab deli ...
rna-seq written 4 months ago by vkgaur2530 • updated 4 months ago by Kevin Blighe32k
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Comment: C: Error while executing "estimateSizeFactors" from DESeq2
... Thank you so much Kevin. It worked well. :) ...
written 4 months ago by vkgaur2530
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Comment: C: Suggest an alignment tool for MinION reads
... No I didn’t use default one. I used mappacbio.sh only ...
written 6 months ago by vkgaur2530
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Comment: C: Making reference fasta file from aligned sam file or bed file
... Oh That makes sense. Thanks. Any suggestions on masking? ...
written 6 months ago by vkgaur2530
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Comment: C: Count the number of reads for multiple genomic locations on different (not all)
... This is what happens after no sleep at all. I am so stupid. Thanks a lot @genomax ...
written 6 months ago by vkgaur2530
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Comment: C: Count the number of reads for multiple genomic locations on different (not all)
... I tried bedtools. Worked, Thanks ...
written 6 months ago by vkgaur2530
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Comment: C: Count the number of reads for multiple genomic locations on different (not all)
... I am sorry , might sound silly but I am not finding upvote link. ...
written 6 months ago by vkgaur2530
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Comment: C: Count the number of reads for multiple genomic locations on different (not all)
... That sounds promising. Thanks a lot. ...
written 6 months ago by vkgaur2530
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Comment: A: Count the number of reads for multiple genomic locations on different (not all)
... Thanks a lot everyone ! :) ...
written 7 months ago by vkgaur2530

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