User: bbhatt

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bbhatt0
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Posts by bbhatt

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Comment: C: Classification of samples based on gene expression profiles
... Thank you for your response. I really appreciate it. I was thinking about using the gene variance feature. The reason I thought of posting here is that a lot of literature is on the DE and I was not able to find very many wherein there are studies that have classified samples based on any clustering ...
written 14 days ago by bbhatt0
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Classification of samples based on gene expression profiles
... Hi, I have questions regarding data analyses of total RNA seq as follows: (1) I know the classical goal of RNA seq experiment is to identify Differentially Expressed (DE) genes between two conditions (for eg, case vs control). However, is there a way to predict the class (i.e case vs control) given ...
R rna-seq sequencing written 14 days ago by bbhatt0
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Comment: A: Filtering of lncRNAs and mRNAs for Differential expression analysis from RNA-seq
... Thanks all for your responses. I do agree that performing lncRNA and mRNA analysis separately is a better approach compared to processing them altogether. ...
written 2.5 years ago by bbhatt0
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Filtering of lncRNAs and mRNAs for Differential expression analysis from RNA-seq data
... Hi there, I wanted to perform DE of lncRNAs and mRNAs from the RNA-seq data using DEseq2. I am wondering if it is a good idea to have separate annotation files for each and then perform the differential expression (DE) or is it OK to perform DE analysis using the annotation files that contains both ...
rna-seq written 2.5 years ago by bbhatt0 • updated 2.5 years ago by EagleEye6.7k

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Popular Question 2.3 years ago, created a question with more than 1,000 views. For Filtering of lncRNAs and mRNAs for Differential expression analysis from RNA-seq data

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