User: stellaparker
stellaparker • 10
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Posts by stellaparker
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... Do you have another suggestion for how I could try to assess this? ...
written 8 months ago by
stellaparker • 10
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... I have a large single cell data set and I am interested in a certain set of approx 50 genes and I want to evaluate in which combinations that they are expressed within single cells.
For example: Cell 1 expresses: gene 1, gene 3, and gene 4
Cell 2 expresses: gene 1, gene 8, gene 18, and gene 17
and ...
written 10 months ago by
stellaparker • 10
• updated
10 months ago by
singlecell • 0
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... They need to match but not necessarily in the same row, but by presence in the key. Like in your example, col2 has an F but it's in row 7 and not 6, so it gets a "FALSE", but an F is really in the list. ...
written 10 months ago by
stellaparker • 10
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... It looked to work initially, but it seems that if there is any value in the "Gene" column and there is also any value at all in then subsequent column, it outputs a "1". It doesn't provide a "1" if the actual gene is there or not. ...
written 11 months ago by
stellaparker • 10
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... That seems to work very well! Thank you so much! ...
written 11 months ago by
stellaparker • 10
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... This is the goal:
![https://i.postimg.cc/rsG4tYGp/Screen_Shot_2018-09-22_at_6.08.22_PM.png][1]
[1]: https://i.postimg.cc/rsG4tYGp/Screen_Shot_2018-09-22_at_6.08.22_PM.png ...
written 11 months ago by
stellaparker • 10
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... I'm not sure if there is an easy way, but I would ultimately need to be in an actual data frame with each gene in column 1 and the following columns being each list with either a 1 or 0 at each gene position depending on its presence in the list. Or each being a column and each list being a row with ...
written 11 months ago by
stellaparker • 10
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... Not quite as in the example that you have posted above, like this:
![enter image description here][1]
[1]: https://i.postimg.cc/yNdysjHZ/Screen_Shot_2018-09-22_at_12.53.22_PM.png ...
written 11 months ago by
stellaparker • 10
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... I'm currently in a format where I have the "list name" as my column header, followed by the genes themselves listed down the column with the next list in the next column. ...
written 11 months ago by
stellaparker • 10
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... I have several (15) very long lists of genes that I want to convert into a binary (present or absent, like a 0 or 1) format in order to compare the sets graphically. Is there a speedy and straightforward way to achieve this? ...
written 11 months ago by
stellaparker • 10
• updated
11 months ago by
RamRS ♦ 23k
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