User: Gabriel R.

gravatar for Gabriel R.
Gabriel R.2.8k
Reputation:
2,750
Status:
Trusted
Location:
Danmarks Tekniske Universitet
Website:
https://grenaud.github...
Twitter:
gabrielylr
Scholar ID:
Google Scholar Page
Last seen:
16 hours ago
Joined:
8 years, 10 months ago
Email:
m***************@yahoo.com

I am assistant professor at the Technical University of Denmark. In a former life, I was postdoc at the Center for Geogenetics at Copenhagen University and before, a Ph.D student in bioinformatics at the Max Planck Institute for Evolutionary Anthropology/ Interested in sequencing, particularly ancient DNA and inference of demography. 

Posts by Gabriel R.

<prev • 392 results • page 1 of 40 • next >
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Comment: C: Merging paired fastq read files with small overlap region.
... could you post 5 sequences or so? ...
written 28 days ago by Gabriel R.2.8k
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Comment: C: Merging paired fastq read files with small overlap region.
... let me try to understand, it is always 6bp? ...
written 28 days ago by Gabriel R.2.8k
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Comment: C: Collapsing my paired-end reads before or after mapping ?
... what is your insert size? ...
written 7 weeks ago by Gabriel R.2.8k
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Comment: C: How to find the GC content by Interval
... not in R but in C++: https://github.com/shahcompbio/hmmcopy_utils I guess you could automate calls in R? ...
written 4 months ago by Gabriel R.2.8k
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Comment: C: Demultiplexing Illumina data
... could you post the offending line? Put 4 whitespaces before the line to keep the format. ...
written 4 months ago by Gabriel R.2.8k
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Comment: C: SamReadViewer - A small utility to visualise read alignment directly from sam fo
... I have coded a subroutine to rebuild the ref. from the CIGAR+MD using htslib, never again! I reuse that code over and over. I would have loved your tool when I was developing my code, it would have saved me a lot of time. I am sure a programmer will enjoy it in the future ;-) ...
written 4 months ago by Gabriel R.2.8k
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Comment: C: SamReadViewer - A small utility to visualise read alignment directly from sam fo
... very useful little tool btw! ...
written 4 months ago by Gabriel R.2.8k
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Comment: C: SamReadViewer - A small utility to visualise read alignment directly from sam fo
... ah great! I only read your biostars post :-) ...
written 5 months ago by Gabriel R.2.8k
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Comment: C: SamReadViewer - A small utility to visualise read alignment directly from sam fo
... nice! maybe point out that you need the MD field to be correct. doesn't it? ...
written 5 months ago by Gabriel R.2.8k
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Comment: C: filter illumina index
... Just so I can understand, could you post examples of sequences you have and a list of expected indices? ...
written 5 months ago by Gabriel R.2.8k

Latest awards to Gabriel R.

Good Answer 8 months ago, created an answer that was upvoted at least 5 times. For A: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
Scholar 8 months ago, created an answer that has been accepted. For A: Evolutionary distance models
Scholar 9 months ago, created an answer that has been accepted. For A: Evolutionary distance models
Scholar 11 months ago, created an answer that has been accepted. For A: Evolutionary distance models
Appreciated 16 months ago, created a post with more than 5 votes. For C: gender SNP marker
Popular Question 23 months ago, created a question with more than 1,000 views. For Merge Scaffolds From Different Individuals?
Scholar 24 months ago, created an answer that has been accepted. For A: Evolutionary distance models
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Good Answer 2.3 years ago, created an answer that was upvoted at least 5 times. For A: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Psmc Parameters To Use
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Great Question 2.4 years ago, created a question with more than 5,000 views. For Out Of Disk Space With Picard Tools ?
Scholar 2.6 years ago, created an answer that has been accepted. For A: Evolutionary distance models
Scholar 2.9 years ago, created an answer that has been accepted. For A: Evolutionary distance models
Appreciated 3.0 years ago, created a post with more than 5 votes. For C: gender SNP marker
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Raxml (Residues Read In Sequence)
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Create A Consensus Of Very Short Sequences
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Scholar 3.3 years ago, created an answer that has been accepted. For A: Evolutionary distance models
Teacher 3.3 years ago, created an answer with at least 3 up-votes. For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Appreciated 3.4 years ago, created a post with more than 5 votes. For C: gender SNP marker
Scholar 3.4 years ago, created an answer that has been accepted. For A: Evolutionary distance models

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