User: Gabriel R.

gravatar for Gabriel R.
Gabriel R.2.4k
Reputation:
2,390
Status:
Trusted
Location:
Center for Geogenetik Københavns Universitet
Website:
https://grenaud.github...
Twitter:
gabrielylr
Scholar ID:
Google Scholar Page
Last seen:
2 hours ago
Joined:
6 years, 1 month ago
Email:
m***************@yahoo.com

Now postdoc at the Center for Geogenetics at Copenhagen University. In a former life, I was a Ph.D student in bioinformatics at the Max Planck Institute for Evolutionary Anthropology/ Interested in sequencing, particularly ancient DNA and inference of demography. 

Posts by Gabriel R.

<prev • 323 results • page 1 of 33 • next >
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Comment: C: How to add RG tag into the optional field in a BAM file
... ok lets try the following: 1) sort your bam files wrt read names, NOT coordinates. 2) run the following: samtools view sortedWRTnames.bam | awk '{ if(substr($1,1,1)=="@"){print $0}else{ idx=substr($1,0,12); printf("%s\t", substr($1,14)); for(i=2;i<=NF;i++){ printf("%s\t",$i); } printf("XI ...
written 1 day ago by Gabriel R.2.4k
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Comment: C: How to add RG tag into the optional field in a BAM file
... yes I am aware. This is essentially a demultiplexing problem. if no one answers by the end of the day, I could be cajoled into making a slight modification to deML to account for this. ...
written 1 day ago by Gabriel R.2.4k
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Comment: C: How to add RG tags in a single cell BAM file where each group indicate barcode
... Do you have a correspondence between the barcode and read group? ex: CAACCATCACTC sample10 ...
written 1 day ago by Gabriel R.2.4k
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Comment: C: How to convert Haplotypes file to PLINK format data
... did you try it? did it work? ...
written 7 days ago by Gabriel R.2.4k
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Comment: C: How to convert Haplotypes file to PLINK format data
... I can code a module to import them using glactools and export in plink. We currently do not support this format but I could code it. ...
written 7 days ago by Gabriel R.2.4k
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Comment: C: How to convert Haplotypes file to PLINK format data
... but they could potentially be: 0.5 0.5 0? just to be sure. ...
written 7 days ago by Gabriel R.2.4k
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Comment: C: How to convert Haplotypes file to PLINK format data
... and I imagine these probabilities are not just 0 and 1 but can be 0.4 for example? But they have to sum up to 1 I suppose. ...
written 8 days ago by Gabriel R.2.4k
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Comment: C: How to convert Haplotypes file to PLINK format data
... and you have a sample file as well? are these files simply zipped and not binary? ...
written 8 days ago by Gabriel R.2.4k
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Comment: C: How to convert Haplotypes file to PLINK format data
... could you post a small subset of your file somewhere? ...
written 8 days ago by Gabriel R.2.4k
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Comment: C: How to convert Haplotypes file to PLINK format data
... is this the output file format: http://www.stats.ox.ac.uk/~marchini/software/gwas/file_format.html ? ...
written 8 days ago by Gabriel R.2.4k

Latest awards to Gabriel R.

Scholar 4 weeks ago, created an answer that has been accepted. For A: Evolutionary distance models
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Raxml (Residues Read In Sequence)
Appreciated 9 weeks ago, created a post with more than 5 votes. For C: gender SNP marker
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Create A Consensus Of Very Short Sequences
Teacher 12 weeks ago, created an answer with at least 3 up-votes. For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Scholar 6 months ago, created an answer that has been accepted. For A: Evolutionary distance models
Appreciated 7 months ago, created a post with more than 5 votes. For C: gender SNP marker
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Scholar 7 months ago, created an answer that has been accepted. For A: Evolutionary distance models
Scholar 9 months ago, created an answer that has been accepted. For A: Evolutionary distance models
Good Answer 9 months ago, created an answer that was upvoted at least 5 times. For A: What Software Programs Do Bioinformaticians Need?
Student 9 months ago, asked a question with at least 3 up-votes. For Out Of Disk Space With Picard Tools ?
Popular Question 12 months ago, created a question with more than 1,000 views. For Merge Scaffolds From Different Individuals?
Epic Question 12 months ago, created a question with more than 10,000 views. For Out Of Disk Space With Picard Tools ?
Good Question 15 months ago, asked a question that was upvoted at least 5 times. For Out Of Disk Space With Picard Tools ?
Popular Question 18 months ago, created a question with more than 1,000 views. For Duplicate Removal Of New Sequence Data?
Popular Question 20 months ago, created a question with more than 1,000 views. For Chry In 1000G Vs Hg19
Appreciated 21 months ago, created a post with more than 5 votes. For C: gender SNP marker
Scholar 21 months ago, created an answer that has been accepted. For A: Evolutionary distance models
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: How To Write A Perl Script To Transform A Sequence In A Tabular File Into A Fast
Voter 22 months ago, voted more than 100 times.
Scholar 23 months ago, created an answer that has been accepted. For A: Evolutionary distance models
Appreciated 23 months ago, created a post with more than 5 votes. For A: Should I Do A Dual Master Degree In Both Bioinformatics And Cs?
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: How To Write A Perl Script To Transform A Sequence In A Tabular File Into A Fast

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