User: Gabriel R.
Gabriel R. • 2.6k
- Reputation:
- 2,570
- Status:
- Trusted
- Location:
- Center for Geogenetik Københavns Universitet
- Website:
- https://grenaud.github...
- Twitter:
- gabrielylr
- Scholar ID:
- Google Scholar Page
- Last seen:
- 13 hours ago
- Joined:
- 7 years, 2 months ago
- Email:
- m***************@yahoo.com
Now postdoc at the Center for Geogenetics at Copenhagen University. In a former life, I was a Ph.D student in bioinformatics at the Max Planck Institute for Evolutionary Anthropology/ Interested in sequencing, particularly ancient DNA and inference of demography.
Posts by Gabriel R.
<prev
• 356 results •
page 1 of 36 •
next >
0
votes
1
answer
158
views
1
answers
... if you have dedicate cycles, it's ok, I was wondering about the output format. ...
written 22 days ago by
Gabriel R. • 2.6k
0
votes
1
answer
158
views
1
answers
... I don't get it. You will simply prime next to read2 and hope to run into the barcode+UMI? ...
written 23 days ago by
Gabriel R. • 2.6k
0
votes
1
answer
158
views
1
answers
... But that is assuming the adapters were sequenced. Were there sequencing cycles to sequence the indices? ...
written 25 days ago by
Gabriel R. • 2.6k
0
votes
1
answer
158
views
1
answers
... Could you post a few lines as example? Do you have an index list? ...
written 26 days ago by
Gabriel R. • 2.6k
0
votes
0
answers
95
views
0
answers
... I am not 100% sure but ANGSD only implements the error model in GATK with "-gl 2" and the samtools one with "-gl 1" ...
written 5 weeks ago by
Gabriel R. • 2.6k
0
votes
1
answer
132
views
1
answers
... They should have the same names as your forward reads, in your case: "M04129:63:000000000-D656Y:1:1101:15821:1334" ...
written 8 weeks ago by
Gabriel R. • 2.6k
0
votes
1
answer
132
views
1
answers
... This indicates that the defline for the forward read and the first index are not the same. You have a record with a defline "@F1". Are you sure this is the per read index? Could you perhaps post the first 40 lines of both files? ...
written 8 weeks ago by
Gabriel R. • 2.6k
0
votes
2
answers
309
views
2
answers
... I am biased but I would recommend my own [deML][1]. It is a maximum-likelihood demultiplexer which is designed to deal with uncertainty and partial information. I still maintain it, let me know if you have any issues.
[1]: http://grenaud.github.io/deML/ ...
written 11 weeks ago by
Gabriel R. • 2.6k
1
vote
1
answer
326
views
1
answers
... Hi both, those are just warnings. deML (http://grenaud.github.io/deML/) is robust to poorly designed indices lists or sequencing runs with very poor quality. These warnings just inform you that an index was used. I have since added this to the README, let me know if this is sufficiently clear and ve ...
written 3 months ago by
Gabriel R. • 2.6k
0
votes
0
answers
196
views
0
answers
... have you tried cegg.unige.ch/newick_utils ? what does it produce? ...
written 3 months ago by
Gabriel R. • 2.6k
Latest awards to Gabriel R.
Popular Question
10 weeks ago,
created a question with more than 1,000 views.
For Merge Scaffolds From Different Individuals?
Teacher
7 months ago,
created an answer with at least 3 up-votes.
For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Teacher
7 months ago,
created an answer with at least 3 up-votes.
For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Good Answer
7 months ago,
created an answer that was upvoted at least 5 times.
For A: What Skills Do You Have To Have As A Phd Graduate In Bioinformatics?
Popular Question
7 months ago,
created a question with more than 1,000 views.
For Psmc Parameters To Use
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Teacher
8 months ago,
created an answer with at least 3 up-votes.
For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Great Question
8 months ago,
created a question with more than 5,000 views.
For Out Of Disk Space With Picard Tools ?
Scholar
10 months ago,
created an answer that has been accepted.
For A: Evolutionary distance models
Scholar
14 months ago,
created an answer that has been accepted.
For A: Evolutionary distance models
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Raxml (Residues Read In Sequence)
Popular Question
15 months ago,
created a question with more than 1,000 views.
For Create A Consensus Of Very Short Sequences
Teacher
16 months ago,
created an answer with at least 3 up-votes.
For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Teacher
20 months ago,
created an answer with at least 3 up-votes.
For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Scholar
20 months ago,
created an answer that has been accepted.
For A: Evolutionary distance models
Scholar
20 months ago,
created an answer that has been accepted.
For A: Evolutionary distance models
Teacher
20 months ago,
created an answer with at least 3 up-votes.
For A: How To Interpret The Kmer Enrichment Plot Of A Fastqc Output
Scholar
22 months ago,
created an answer that has been accepted.
For A: Evolutionary distance models
Good Answer
22 months ago,
created an answer that was upvoted at least 5 times.
For A: What Software Programs Do Bioinformaticians Need?
Student
23 months ago,
asked a question with at least 3 up-votes.
For Out Of Disk Space With Picard Tools ?
Popular Question
2.1 years ago,
created a question with more than 1,000 views.
For Merge Scaffolds From Different Individuals?
Epic Question
2.1 years ago,
created a question with more than 10,000 views.
For Out Of Disk Space With Picard Tools ?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1659 users visited in the last hour