User: Rasoul Godini

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Posts by Rasoul Godini

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Perl script required
... Hi everyone, I need an script to select specific sequences among many results of a local blast output file. Briefly, I have an blast output file containing many alignments in different frame shifts with E-value and bit scores. Each sequence has different frame shift results. Now, I want to select ...
alignment sequence written 3 months ago by Rasoul Godini0 • updated 3 months ago by Shred60
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Answer: A: Selection of hub gene on the basis of node degree
... hi As far as I know, this is arbitrary. You can select top 10 or 5 percent nodes based degree. ...
written 4 months ago by Rasoul Godini0
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Answer: A: find significant analysis?
... Hi To find significancy you need an statistical threshold like p-value. to make that you need some repeats. But in here you have only genes selected by a threshold already. Here, you can use Venn diagram to show common DEGs and punctuate on findings by writing about percentage of your DEGs which are ...
written 4 months ago by Rasoul Godini0
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Answer: A: Arrayexpress processed data
... Hi you can go to the platform which the job is done with, in your case it is GPL6106 (do this on NCBI by searching one of the source name for instance GSM601376 and find the platform). Download a table containing all information about probes, open it in an excel file and easily use V-lookup formula ...
written 4 months ago by Rasoul Godini0

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