User: lagartija
lagartija • 90
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Posts by lagartija
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... Have you checked that the adapter sequence given by fastqc is the same sequence that is in TruSeq3-PE.fa ? ...
written 17 days ago by
lagartija • 90
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... I use codeml on neutral model but it is really non trivial ...
written 17 days ago by
lagartija • 90
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... Hi,
I am working on a cytoscape network with an "edge-weighted" layout (very important, because everything is connected). Still I never manage to understand if the column I give as the edge weight value should be a distance or a similarity. The network looks quite similar whether I interpret my e ...
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... Hi,
I wonder if there is any file that summarizes how to enter any type of model in MrBayes.
I got from here : https://www.biostars.org/p/79305/ how to translate +I, +G and +F but not the actual model.
For example, how do I translate PMB+F+R6 or Blosum62+F+R6
Thank you ! ...
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... Found a way :
apt install libgit2-dev
install.packages("gert") then "usethis" then "devtools" ...
written 10 weeks ago by
lagartija • 90
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... Hi,
I ran my metagenomes through several tools (IPscan, EggNOG...) and now I wish to integrate and visualize my data for functional annotation and viewing pathways through KEGG for example. Do you know a tool for that ?
MEGAN seems good but I don't know if I don't manage to use it just to visualiz ...
written 3 months ago by
lagartija • 90
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... Thank you, I think I agree. I only have a distance matrix because I am comparing images pairwise and the first step is to output a distance. ...
written 4 months ago by
lagartija • 90
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... So you have you new headers in a file or you just want your headers to be like
ASV1, ASV2... ? ...
written 4 months ago by
lagartija • 90
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Comment:
C: Error when running Metabat 2
... Please send us your command.
This worked for me :
`jgi_summarize_bam_contig_depths --outputDepth output_depth_jgi.txt input.bam`
...
written 4 months ago by
lagartija • 90
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... sorry :
`for i in *.faa ; do sed '/^>/ s/ .*//' $i > result/$i ; done` ...
written 4 months ago by
lagartija • 90
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Popular Question
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For Hybrid assembly using MinION data + correction with Illumina. Which strategy to adopt ?
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Popular Question
4 months ago,
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For How to annotate nodes in Cytoscape
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For Hybrid assembly using MinION data + correction with Illumina. Which strategy to adopt ?
Popular Question
22 months ago,
created a question with more than 1,000 views.
For Hybrid assembly using MinION data + correction with Illumina. Which strategy to adopt ?
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