User: anand.gururajan

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Posts by anand.gururajan

<prev • 4 results • page 1 of 1 • next >
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Plotting summary Log2FC - Group A v B
... Hi. I've generated some RNA-seq data and have my list of DE genes between two groups and fold-changes (log2FC). I'd like to be able to plot a summary heatmap of log2FC for this group comparison in a single bar similar to the one in this paper for [Figure4A][1]. Would anyone happen to know ideas o ...
ggplot log2fc rna-seq singlebarheatmap written 5 days ago by anand.gururajan0 • updated 4 days ago by ATpoint38k
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DEXSeq output from Galaxy
... Hi everyone. I'm new to using DEXSeq on Galaxy and had a question about the format of the output. From the description on the Galaxy tool, the format of the results file has 14 standard column headings plus unlabelled columns for the samples being compared. Exon usage level coefficients are reported ...
dexseq galaxy written 11 months ago by anand.gururajan0 • updated 11 months ago by WouterDeCoster44k
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Identifying pri-microRNA sequence from microRNA sequence
... Hi all. Given miRNA-seq data, is there a way to bioinformatically predict the sequence of the pri-miRNAs? Does anyone reference to a paper with an algorithm (in R or python) for doing this? And lastly, has anyone experimentally validated that a specific pri-miRNA produces a specific miRNA? Than ...
rna-seq microrna written 22 months ago by anand.gururajan0 • updated 8 months ago by Biostar ♦♦ 20
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Modular differential connectivity
... Hi. Using RNA-seq data, i've managed to generate modules using WGCNA that are unique to specific experimental groups. This was using the tutorial on the UCLA website. I'm now trying to look at connectivity within a module. I have access to the R script (https://www.rdocumentation.org/packages/DGC ...
R rna-seq written 2.4 years ago by anand.gururajan0 • updated 2.4 years ago by Kevin Blighe65k

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