User: StudentBio

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StudentBio0
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Posts by StudentBio

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problem to generate p3in input file for primer3
... hello please i need your help i want generate input file for primer3 for SSR(MISA) this is my command: perl p3_in.MAG.pl genome.fasta.misa and i got this error in my shell, > Use of uninitialized value $count in concatenation (.) or string at p3_in.MAG.pl line 37, chunk 50655. ...
misa p3in primer written 4 weeks ago by StudentBio0 • updated 4 weeks ago by h.mon21k
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Comment: C: build databses for genome using snpEff
... #phoenix dactylifera dpv01.genome : phoenix_dactylifera ...
written 3 months ago by StudentBio0 • updated 3 months ago by finswimmer6.9k
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Comment: C: build databses for genome using snpEff
... java -jar snpEff.jar build -gff3 -v dpv01 ...
written 3 months ago by StudentBio0 • updated 3 months ago by finswimmer6.9k
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build databses for genome using snpEff
... hello, please i got this error when i try building a database for date plam genome Total: 363391 markers added. Create exons from CDS (if needed): ..................................................................+.................................................................. ...
annotation snpeff snp written 3 months ago by StudentBio0 • updated 3 months ago by finswimmer6.9k
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Comment: C: efficient tool for annotate variant in phoenix dactylifera
... I wanted to try ANNOVAR but I can not download it ...
written 3 months ago by StudentBio0
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efficient tool for annotate variant in phoenix dactylifera
... hello please i try to annotate variants in the vcf file for phoenix dactylifera and I don't know which tool is more efficient for plants ...
vcf annotation snp plant written 3 months ago by StudentBio0
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Comment: C: solution for SPades to assemble genome with low quality data
... my file is 14 GB single-cell want mean it seems that i don t understand it ...
written 3 months ago by StudentBio0
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Comment: C: solution for SPades to assemble genome with low quality data
... 50 and quality score for position in reads are betweeen 28 and 20 after trimming ...
written 3 months ago by StudentBio0
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Comment: C: solution for SPades to assemble genome with low quality data
... 50 and quality score for position in reads are betweeen 28 and 20 after trimming ...
written 3 months ago by StudentBio0
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solution for SPades to assemble genome with low quality data
... hello the community when I run spades with this command: inra@inra-VirtualBox:~/SPAdes-3.5.0-Linux/bin$ ./spades.py --sc -m 4 --iontorrent -k 21,33,55,77,99,127 -s /home/inra/share/outils/trimmed.fastq -o /home/inra/share/spades i get this error, please any suggestions, i have single-reads fro ...
assembly ion-torrent spades single-end written 4 months ago by StudentBio0 • updated 4 months ago by Sej Modha3.8k

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