User: StudentBio

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StudentBio0
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Posts by StudentBio

<prev • 29 results • page 1 of 3 • next >
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Comment: C: build databses for genome using snpEff
... #phoenix dactylifera dpv01.genome : phoenix_dactylifera ...
written 7 weeks ago by StudentBio0 • updated 7 weeks ago by finswimmer5.4k
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Comment: C: build databses for genome using snpEff
... java -jar snpEff.jar build -gff3 -v dpv01 ...
written 7 weeks ago by StudentBio0 • updated 7 weeks ago by finswimmer5.4k
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build databses for genome using snpEff
... hello, please i got this error when i try building a database for date plam genome Total: 363391 markers added. Create exons from CDS (if needed): ..................................................................+.................................................................. ...
annotation snpeff snp written 7 weeks ago by StudentBio0 • updated 7 weeks ago by finswimmer5.4k
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Comment: C: efficient tool for annotate variant in phoenix dactylifera
... I wanted to try ANNOVAR but I can not download it ...
written 8 weeks ago by StudentBio0
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efficient tool for annotate variant in phoenix dactylifera
... hello please i try to annotate variants in the vcf file for phoenix dactylifera and I don't know which tool is more efficient for plants ...
vcf annotation snp plant written 8 weeks ago by StudentBio0
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Comment: C: solution for SPades to assemble genome with low quality data
... my file is 14 GB single-cell want mean it seems that i don t understand it ...
written 8 weeks ago by StudentBio0
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Comment: C: solution for SPades to assemble genome with low quality data
... 50 and quality score for position in reads are betweeen 28 and 20 after trimming ...
written 8 weeks ago by StudentBio0
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Comment: C: solution for SPades to assemble genome with low quality data
... 50 and quality score for position in reads are betweeen 28 and 20 after trimming ...
written 8 weeks ago by StudentBio0
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solution for SPades to assemble genome with low quality data
... hello the community when I run spades with this command: inra@inra-VirtualBox:~/SPAdes-3.5.0-Linux/bin$ ./spades.py --sc -m 4 --iontorrent -k 21,33,55,77,99,127 -s /home/inra/share/outils/trimmed.fastq -o /home/inra/share/spades i get this error, please any suggestions, i have single-reads fro ...
assembly ion-torrent spades single-end written 9 weeks ago by StudentBio0 • updated 9 weeks ago by Sej Modha3.6k
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Comment: C: kmergenie does not predicted a best k value
... i'm sorry but i dont know how i can expect genome size and ploidy, and target sequencing coverage and this for what i'm trying to find the best K for use Genomescope qui (detecting the genome characteristics) according to fastqc report: Sequence length 20-397 and %GC 42 about my reads i trimmed t ...
written 11 weeks ago by StudentBio0

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