User: erans995

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erans9950
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Posts by erans995

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Comment: C: How to change the type of the returned accession number
... The output file looks just like what you posted yesterday: > 1. CYTB Cytb [Mammuthus primigenius (woolly mammoth)] Other Designations: Cytb; cytochrome b Mitochondrion: MT Annotation: Chromosome MT NC_007596.2 (14151..15286) ID: 3773153 How can I modify the script so that just the accession nu ...
written 10 months ago by erans9950
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Comment: A: How to change the type of the returned accession number
... Up... How can I extract just the accession number from the output file using Perl? ...
written 10 months ago by erans9950
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Comment: C: How to change the type of the returned accession number
... How can I extract just the accession number from the output file using Perl? ...
written 10 months ago by erans9950
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Comment: C: How to change the type of the returned accession number
... How can I extract just the accession number from the output file using Perl? ...
written 10 months ago by erans9950
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Comment: C: How to change the type of the returned accession number
... The following error is printed to the output file: Cytb [Mammuthus primigenius (woolly mammoth)]CytbOther Designations: Cytb; cytochrome bMitochondrion: MT Annotation: Chromosome MT, NC_007596.2 (14151..15286)ID: 3773153 If I'm using perl, how am I supposed to access the database gene? ...
written 10 months ago by erans9950
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Comment: C: How to change the type of the returned accession number
... Yes, here it is: https://www.ncbi.nlm.nih.gov/books/NBK25498/ Scroll down to application 1, the code I posted is a modified version of it. ...
written 10 months ago by erans9950
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Comment: C: How to change the type of the returned accession number
... Look, I've got the code I posted from the NCBI API page. It doesn't matter if it's still relevant or not, I just need to modify the code to print the desired accession number. Can you help me with that? ...
written 10 months ago by erans9950
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Comment: C: How to change the type of the returned accession number
... Like I've said, the accession number AI211211.1 is the output of the program. This web page proves the correlation between the the GID and the desired accession number: https://www.ncbi.nlm.nih.gov/gene/?term=3773153 ...
written 10 months ago by erans9950
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How to change the type of the returned accession number
... Hello everyone I have the following code that prints an accession number to a file based on the Gene ID the user entered: use LWP::Simple; #assemble the URL $base = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/'; $url = $base . "efetch.fcgi?db=nucleotide&id=$ARGV[0]& ...
ncbi accession number type perl written 10 months ago by erans9950
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Unable to retrieve Fasta of certain NCBI entries given their accession number
... Hello everyone I have the following perl code that prints an entry's FASTA sequence to a file given its accession number: LWP::Simple; #append [accn] field to each accession for ($i=0; $i < @ARGV; $i++) { $ARGV[$i] .= "[accn]"; } #join the accessions with OR ...
perl ncbi accession number fasta written 11 months ago by erans9950 • updated 10 days ago by josev.die10

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