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Posts by ghmdsr
... Let's suppose that there are 100 genes in one specific gene set and 20000 genes are used in making ranked list. 50 genes in the gene set are located in top of ranked list(pvalue very low,sign of fold-change= +), and the other 50 genes are located in the bottom of ranked list.(pvalue very low, sig ...
... Hi I'm first year graduate student. I make an algorithm, so I want to test my algorithm ... but i don't know where I can get it. Input data for my algorithm is transcriptome data. I need raw count data, (especially, about kinase amplification) Please let me know where I can get raw count data. ...
... hi i'm first-year graduate student. I got the result of my analysis in which NES is included. I wonder about the meaning of positive score/negative score of NES. I know that NES negative score means weaker relative activity in a sample compared with the background population, and positive score ...
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