User: Za

gravatar for Za
Za40
Reputation:
40
Status:
New User
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Last seen:
1 day, 19 hours ago
Joined:
2 months, 3 weeks ago
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i********@yahoo.com

Posts by Za

<prev • 112 results • page 1 of 12 • next >
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Comment: C: how to produce plots like this in R
... Sorry, but here should I normalise for number of cells in each group? I mean when the bigger circle shows higher number of cells ...
written 3 days ago by Za40
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Comment: C: How to make a clear box plot or whatever beautiful for showing the ratio of two
... Thank you, `p+coord_cartesian(ylim = quantile(gx$Expression, c(0.1, 0.9)))` removed the outliers ...
written 4 days ago by Za40
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Comment: C: How to make a clear box plot or whatever beautiful for showing the ratio of two
... Sorry how to remove outliers and show the mean? ...
written 4 days ago by Za40
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Comment: C: How to make a clear box plot or whatever beautiful for showing the ratio of two
... Hi, sorry I need help on this picture please > head(gx) id time Expression 1 DDB_G0267382 h0_T 10.215756 2 DDB_G0267418 h0_T 12.772017 3 DDB_G0267438 h0_T 9.700146 4 DDB_G0267440 h0_T 5.189603 5 DDB_G0267454 h0_T 13.281143 6 DDB_G0267462 h0_T ...
written 4 days ago by Za40
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Comment: C: Why can't I reproduce the same heat map
... Sorry Kevin, do you know what happened? this sort of heat maps gives me opposite blocks of genes expression even for replications inside the same sample what is totally unexpected. Do you know a way to order genes for one samples from max to min (z-score) also the same for another samples. So that I ...
written 8 days ago by Za40
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Comment: C: Why can't I reproduce the same heat map
... Excuse me and thanks a lot for being very helpful. But my question here is not why my figure does not look as the figure in publication. Here question is: I have two heatmaps with same order of genes produced by ComplexHeatmap package. As you are considering the yellow color in right heatmap is ligh ...
written 8 days ago by Za40
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Comment: C: How to cluster genes in heatmap
... Sorry Kevin, by mingling your code and complexheatmap option to keep genes in same order in two heat maps, I have this heat map. Now, how I can make the right heat map with more smooth coloring, I mean left heat map is darker and right one is higher. library(ComplexHeatmap) library(circliz ...
written 8 days ago by Za40
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Comment: C: Why I can't reproduce this heat map
... sorry, I have faced a big confusion, if possible help me please I have link to r object of the matrix here. I have 0 time point from two very similar experiments. when I am plotting correlation, correlation says that these samples are highly correlated but when I am plot a heat map of them (genes ...
written 9 days ago by Za40
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Comment: C: Why I can't reproduce this heat map
... Thank you, this is a different task I should do today, I know the order of genes but they are not visible in rows and I am trying to have a clear gene names in rows rather by manually putting the genes in rows. About your your nice suggestion, if I convert my matrix to z-score, I should figure out h ...
written 9 days ago by Za40
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Comment: C: Why I can't reproduce this heat map
... sorry, you know what I should add to the code so that genes in rows can be read? I know the list of genes but after clustering I should know the order of genes ...
written 9 days ago by Za40

Latest awards to Za

Centurion 12 days ago, created 100 posts.
Rising Star 5 weeks ago, created 50 posts within first three months of joining.
Supporter 8 weeks ago, voted at least 25 times.

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