User: v27

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v2710
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Posts by v27

<prev • 6 results • page 1 of 1 • next >
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copy number variation
... I want to detect copy number variation in fungi data (paired-end, Illumina data). The data is as following:`2 sensitive 2 resistant strains 1 reference` Could someone suggest me a tool for detecting CNV. ...
copy number variation written 26 days ago by v2710
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Comment: C: Copy number variation detection
... thank you. I am not working on tumor data. I have a reference fungi sequence. and four other fungi samples. I have 2 objectives: to find the SNPs and second to find the copy number variation among genes. I have successfully detected the SNPs using samtools and vcf tools. I am stuck with detectio ...
written 4 weeks ago by v2710
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Comment: C: Copy number variation detection
... thank you. I appreciate it. I will keep it in mind for the future. ...
written 4 weeks ago by v2710
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Copy number variation detection
... `Hi I trying to detect copy number variation using varscan: the command that i used is samtools mpileup -q 1 -f Reference.fa k_output_bowtie2.bam | java -jar VarScan.v2.3.9.jar copynumber varscan_S14 --mpileup 1 i get the following error: [mpileup] 1 samples in 1 input files Set ...
varscan copy number variation snp written 4 weeks ago by v2710 • updated 4 weeks ago by d-cameron1.8k
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Copy number variation detection
... i want to detect copy number variation among gene from whole genome sequencing data of bacteria. I have an idea how to detect the SNP/SNV's. i have the used sam/bam/vcf/bcf tools to detect it. I have tried using the VarScan ...but i get an error. Could someone suggest a command line tool to det ...
genome next-gen sequence written 6 weeks ago by v2710 • updated 20 days ago by Biostar ♦♦ 20
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Comment: C: RMSD of a structural superposition
... could you give reference to an article that supports RMSD value should be close to zero ...
written 6 weeks ago by v2710

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