User: v27

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v2710
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Posts by v27

<prev • 12 results • page 1 of 2 • next >
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Comment: C: how to match column entries among files?
... thank you for the code :) ...
written 8 weeks ago by v2710
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Comment: C: how to match column entries among files?
... just running on a deadline right now... ...
written 8 weeks ago by v2710
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Comment: C: how to match column entries among files?
... could you please give me the code .. i have to repeat this for 2500 files. code would make it a lot easier for me ...
written 8 weeks ago by v2710
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Comment: C: how to match column entries among files?
... i can do this in excel ..... but i have 2500 files for which i need to repeat the procedure . ...
written 8 weeks ago by v2710
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how to match column entries among files?
... I have 3 files : File1 WP_082277722.10 gi|37527581|ref|NP_930925.1| 59.420 138 46 3 141 275 2895 3025 1.34e-41 157 49 WP_082277722.10 gi|91779924|ref|YP_555132.1| 49.254 134 56 3 151 276 2074 2203 6.02e-27 115 46 WP_082277722.10 gi|212640077|ref|YP_002316597.1| 33.981 103 57 5 180 275 ...
command line programming written 8 weeks ago by v2710 • updated 8 weeks ago by RamRS17k
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python and bidirectional hit
... i have written a program to detect the bidirectional hit. which is as follows query = open("abc.txt","r").readlines() database = open("cba","r").readlines() Q2Ddict = {} for line in query: Q2Ddict[line.rsplit()[0]] = line.rsplit()[1] D2Qdict = {} for line in d ...
python best bidirectional hit written 12 weeks ago by v2710
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copy number variation
... I want to detect copy number variation in fungi data (paired-end, Illumina data). The data is as following:`2 sensitive 2 resistant strains 1 reference` Could someone suggest me a tool for detecting CNV. ...
copy number variation written 3 months ago by v2710 • updated 6 weeks ago by doctor.dee005130
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Comment: C: Copy number variation detection
... thank you. I am not working on tumor data. I have a reference fungi sequence. and four other fungi samples. I have 2 objectives: to find the SNPs and second to find the copy number variation among genes. I have successfully detected the SNPs using samtools and vcf tools. I am stuck with detectio ...
written 4 months ago by v2710
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Comment: C: Copy number variation detection
... thank you. I appreciate it. I will keep it in mind for the future. ...
written 4 months ago by v2710
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Copy number variation detection
... `Hi I trying to detect copy number variation using varscan: the command that i used is samtools mpileup -q 1 -f Reference.fa k_output_bowtie2.bam | java -jar VarScan.v2.3.9.jar copynumber varscan_S14 --mpileup 1 i get the following error: [mpileup] 1 samples in 1 input files Set ...
varscan copy number variation snp written 4 months ago by v2710 • updated 4 months ago by d-cameron1.9k

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