User: tcom111

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tcom11110
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Posts by tcom111

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Bcftools view. FREQ inclusion error.
... [[Problem solved]] Dear all, Same as before, I switched to Float in accordance with finswimmer's suggestion: ##FORMAT= The problem remained. However I figured out that the "%" makes the calculation (<,>,=) faulty. To cope this, I modified the VCF file where the "FREQ" data appears, and ...
written 17 months ago by tcom11110
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Comment: C: Bcftools view. FREQ inclusion error.
... Dear sm.hashemin, Thanks for your reply. Currently the header looks as follows: ##FORMAT= I switched the "String" to "Float" and also tried replacing the "1" to "." I doesn't work and also generates this error during the generation of the filtered file using the bcftools view command: [E ...
written 17 months ago by tcom11110 • updated 17 months ago by Kevin Blighe51k
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Comment: C: Bcftools view. FREQ inclusion error.
... Yes, Here is the format description in the vcf file: GT:GQ:SDP:DP:RD:AD:FREQ:PVAL:RBQ:ABQ:RDF:RDR:ADF:ADR ...
written 18 months ago by tcom11110
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Bcftools view. FREQ inclusion error.
... Dear all, I designed a scipt (running from Jupyter notebook, Python3) that takes vcf files of choice (by some string filters) and generates their gzipped version after filtering using BCFTOOL view -i ** -t*** supplied by the user. When using an inclusion of depth e.g DP > 100, the script works a ...
freq annovar bcftools variant calling written 18 months ago by tcom11110

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Scholar 17 months ago, created an answer that has been accepted. For A: Bcftools view. FREQ inclusion error.

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