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Posts by drkennetz
... This should give you what you are looking for: #!/usr/bin/env python import sys fastq = sys.argv with open(fastq, 'r') as f: reads =  for line in f: if line.startswith("@"): reads.append(line) print("The total number of reads is: ...
... for this line: chrom = line.strip().split('>') It could be replaced with: chrom = line.strip().strip('>').split() Which would get rid of the '>' and just return the value (for example when running on an actual genome). printing this line for genome hg19 yields: 1 10 11 12 1 ...
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