User: BioLite
BioLite • 20
- Reputation:
- 20
- Status:
- New User
- Location:
- Last seen:
- 8 months ago
- Joined:
- 1 year, 10 months ago
- Email:
- m*****@csu.edu.cn
Posts by BioLite
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... I have been trying to make batch univariate cox analysis with apply family and for loops, but I can't edit useful and effective codes. Please, please help me!
I have prepared two kinds of data. Data A, "data_train_list" is a list comprising many data frames. And each column elements in every data f ...
written 8 months ago by
BioLite • 20
• updated
8 months ago by
Kevin Blighe ♦ 56k
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Comment:
C: R package survivalROC error
... Thanks to the manager. I have corrected my post. ...
written 9 months ago by
BioLite • 20
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... Hi, company,
I am using package survivalROC to plot roc curv. But when I calculate true-positive and false-positive with function survivalROC, I get an error ,
Here are my analyzing code:
survivalROC(Stime = HR_ICGC_e_sample$time,
status = HR_ICGC_e_sample$status,
...
written 9 months ago by
BioLite • 20
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... I want to run a meta-analysis with some GEO datasets from several different platforms, including
GPL257(NCI_UniGEM2_HCC), GPL25507(NanoString cancer immune panel v1.1 + 6 custom genes), GPL8432(Illumina HumanRef-8 WG-DASL v3.0), and some Affymetrix microarrays with different sub-platform.
I want ...
written 12 months ago by
BioLite • 20
• updated
12 months ago by
Kevin Blighe ♦ 56k
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... Hi,
Does anybody know glmnet? I've read some articles, which referred to a gene-pairs conception, and they analyzed survival data within the form of gene-pairs. [enter link description here][1] and [enter link description here][2].
What puzzles me is how to prepare the needed data. I know they all ...
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... Hi, companies,
I want to search some genes (less than 25) interactions. Because of its abundant database information, I choose to import these interactions by Cytoscape public database. However, it runs like a little tortoise, despaired.
Maybe someone would give me some useful suggestions? Thanks! ...
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... Thanks for your patience~
Wish you have a great day! ...
written 16 months ago by
BioLite • 20
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... But, dear Kevin, please forgive my carelessness firstly.
It's happened to me that there are "ClinicalTraits.csv" in WGCNA tutorial, like this,[ClinicalTraits.csv][1], and we can see many NAs in this table.
Another, I have noticed that tutorial codes didn't cut or make any other treatments to these N ...
written 16 months ago by
BioLite • 20
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... Yes, Kevin, thanks for your help, I will check my data again, hoping to reach a not bad result.
Thanks again! ...
written 16 months ago by
BioLite • 20
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... Hi, heroes,
I want to create a WGCNA trait file with microarray clinical information. This clinical information includes numerical variable, nominal variable, and an ordinal categorical variable, the embarrassing thing is they all have NAs.
I know using numbers to stand for the former two variable ...
written 16 months ago by
BioLite • 20
• updated
16 months ago by
Kevin Blighe ♦ 56k
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