User: BioLite
BioLite • 20
- Reputation:
- 20
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- New User
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- Last seen:
- 4 days, 18 hours ago
- Joined:
- 6 months, 4 weeks ago
- Email:
- m*****@csu.edu.cn
Posts by BioLite
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... Hi, companies,
I want to search some genes (less than 25) interactions. Because of its abundant database information, I choose to import these interactions by Cytoscape public database. However, it runs like a little tortoise, despaired.
Maybe someone would give me some useful suggestions? Thanks! ...
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... Thanks for your patience~
Wish you have a great day! ...
written 10 days ago by
BioLite • 20
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... But, dear Kevin, please forgive my carelessness firstly.
It's happened to me that there are "ClinicalTraits.csv" in WGCNA tutorial, like this,[ClinicalTraits.csv][1], and we can see many NAs in this table.
Another, I have noticed that tutorial codes didn't cut or make any other treatments to these N ...
written 11 days ago by
BioLite • 20
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... Yes, Kevin, thanks for your help, I will check my data again, hoping to reach a not bad result.
Thanks again! ...
written 11 days ago by
BioLite • 20
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... Hi, heroes,
I want to create a WGCNA trait file with microarray clinical information. This clinical information includes numerical variable, nominal variable, and an ordinal categorical variable, the embarrassing thing is they all have NAs.
I know using numbers to stand for the former two variable ...
written 11 days ago by
BioLite • 20
• updated
11 days ago by
Kevin Blighe ♦ 33k
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... Hi,
I'm dealing with TCGA data, but when I visualized my interested genes with TCGAnalyze_SurvivalCoxNET function, I was informed an error by R. Here is my code and error:
TabCoxNet <- TCGAvisualize_SurvivalCoxNET(dataClin,
dataFilt,
...
written 26 days ago by
BioLite • 20
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Comment:
C: Help for TCGA CNV data error.
... Woo...
It works well.
Embarrassing and sorry for my careless..
Thank you, handsome and kind Kevin. ...
written 28 days ago by
BioLite • 20
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Comment:
C: Help for TCGA CNV data error.
... Dear Kevin,
Thanks for your help, but the error still exists.
load(lihcnocnvhg19.rda)
Error in load(lihcnocnvhg19.rda) : object 'lihcnocnvhg19.rda' not found
Maybe there are some faults in my GDCquery() arguments? Crying... ...
written 29 days ago by
BioLite • 20
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... Hi,
I'm analyzing TCGA CNV data, following the workflow in TCGAWorkflow(https://www.bioconductor.org/packages/release/workflows/vignettes/TCGAWorkflow/inst/doc/TCGAWorkflow.html#genomic_analysis), I write code as following to get TCGA-LIHC' CNV data:
#Genomic analysis
query.lihc.nocnv <- ...
written 29 days ago by
BioLite • 20
• updated
29 days ago by
Kevin Blighe ♦ 33k
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... Maybe I can use cutree() extract every subgroup, and then calculate their PCC summations then making a comparison?
But this doesn't like the best method? ...
written 9 weeks ago by
BioLite • 20
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