User: Eugene A

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Eugene A0
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Posts by Eugene A

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Comment: C: troubles with exon coordinate extraction from ucsc
... Thanks! Probably I indeed will work around it. I just naively thought that getting the exon coordinates for set of genes from the ucsc should be one step procedure. ...
written 4 months ago by Eugene A0
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Comment: C: troubles with exon coordinate extraction from ucsc
... Thanks! I'm new to biostar so I did not know about that option. ...
written 4 months ago by Eugene A0
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troubles with exon coordinate extraction from ucsc
... May be this is some misunderstanding from my side but I failed to figure it out so far. I'm trying to extract exons coordinates for given set of genes (in bed format) from UCSC, which seems to be a straite forward task. here the one line example from the bed file (the coordinates are in hg38): ...
genome software error sequence written 4 months ago by Eugene A0 • updated 4 months ago by RamRS19k
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Differential expression with leave one out?
... Hi everyone, I have a general question concerning RNAseq analysis. I'm running the analysis, comparing 17 vs 39 biological replicas and the goal is to identify biomarkers for these two group. In order to identify DE genes I'm using DESeq2. I filter the resulting list by Log2fold change >1,<-1 ...
rna-seq written 6 months ago by Eugene A0

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