User: samet

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samet0
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Posts by samet

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Comment: C: Finding Gene Symbols for Probes in Raw Data
... Yes, it does. The problem is that, although raw data files and platform has the same number of rows (50400 for each), **the order is not identical**. E.g. the 6th row contains **MAR6** gene in the raw data tables but **HPRT1** in platform. Which means that the gene symbol of a probe with `ID_REF = 6 ...
written 4 weeks ago by samet0
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Comment: C: Finding Gene Symbols for Probes in Raw Data
... Yes, I'm already using it to get gene symbols for probes of Normalized Series Matrix (by mapping `ID_REF`s to `ID`s in platform). But, I need to get symbols for probes in **Non-normalized** dataset (which does not have `ID_REF` values). ...
written 4 weeks ago by samet0
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Finding Gene Symbols for Probes in Raw Data
... Dear all, I'm working on **[GSE23561][1]** dataset and **[GPL10775][2]** platform. There are **RAW Data Files** and a **Normalized Series Matrix File** in GEO. By mapping `ID_REF`s in normalized series matrix to `ID`s in platform, I can get gene symbols (Symbol v12) for any probe. But, I need t ...
gene gpl gse chip-seq geo written 4 weeks ago by samet0

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