User: volvicpellegrino

Reputation:
0
Status:
New User
Last seen:
1 week ago
Joined:
1 month, 3 weeks ago
Email:
p***************@dpag.ox.ac.uk

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by volvicpellegrino

<prev • 5 results • page 1 of 1 • next >
0
votes
4
answers
258
views
4
answers
Comment: C: Concatenating fastq.gz files across lanes
... Thank you so much to both of you! That makes total sense. ...
written 7 weeks ago by volvicpellegrino0
0
votes
4
answers
258
views
4
answers
Comment: C: Concatenating fastq.gz files across lanes
... Thanks again, so breaking it down it looks like it lists all files in the directory, truncates the directory values, extracts the 2nd and 3rd fields delimited by '_', sorts them (alphanumerically?), filters matching occurrences, and then runs a concatenate command for every file matching each line o ...
written 7 weeks ago by volvicpellegrino0
0
votes
4
answers
258
views
4
answers
Comment: C: Concatenating fastq.gz files across lanes
... Thanks very much for this - could you explain how it works or point me in the right direction to understand? ...
written 7 weeks ago by volvicpellegrino0
0
votes
4
answers
258
views
4
answers
Comment: C: Concatenating fastq.gz files across lanes
... Thanks for your help - the trouble is I have no idea how to specify the right files in a for loop. I understand the principle, its how you construct the code that is the issue. I guess I might have more luck with python. I suppose I could try an os.walk across the directory and a for loop check for ...
written 7 weeks ago by volvicpellegrino0
11
votes
4
answers
258
views
9 follow
4
answers
Concatenating fastq.gz files across lanes
... Hi, I have spent several hours trying to figure out the best approach to do this. It would have been quicker to manually do it, but I will need to do this in future. I have 40 paired-end RNAseq samples that were read across 5 lanes. I therefore have 400 fastq.gz files that I would like to process ...
rna-seq written 7 weeks ago by volvicpellegrino0 • updated 7 weeks ago by swbarnes23.8k

Latest awards to volvicpellegrino

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 979 users visited in the last hour