User: fereshteh

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fereshteh30
Reputation:
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Status:
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Location:
Belgium
Last seen:
2 hours ago
Joined:
1 month, 2 weeks ago
Email:
f***************@ymail.com

Posts by fereshteh

<prev • 12 results • page 1 of 2 • next >
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Comment: C: Imbalance up and down regulated genes
... Hello Russhh, I posted the new MAplot ...
written 7 days ago by fereshteh30
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Comment: C: Imbalance up and down regulated genes
... ![MAplot][1] [1]: https://image.ibb.co/g3O7XT/MA_plot.jpg ...
written 7 days ago by fereshteh30
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Comment: C: Imbalance up and down regulated genes
... Hello Russh, sorry for my late reply here is the MAplot after using lfcshrink ...
written 7 days ago by fereshteh30
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Comment: C: Imbalance up and down regulated genes
... Thanks Yes, there is a batch effect between samples, they’re not from the same run and I did the analysis between 24 test and 3 control samples, my test samples are tumor samples that are infected by a virus. I tried many ways of analysis without removing batch effect, the number of upregulated gene ...
written 8 days ago by fereshteh30
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Imbalance up and down regulated genes
... Hello Biostars, I did differential expression analysis by DESeq2 whit LFC=1 and FDR=005, but I found a list of significant differentially expressed genes which is imbalanced, (1345 upregulated and 38 downregulated genes). Does it mean my analysis is not correct or this can happen? thanks ...
rna-seq written 8 days ago by fereshteh30 • updated 8 days ago by doctor.dee00560
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Comment: C: How can i do enrichment analysis more precisely for differential expression anal
... Thank you for your good package ...
written 21 days ago by fereshteh30
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Comment: C: How can i do enrichment analysis more precisely for differential expression anal
... I use R version 3.5 on windows. and installed dependency packages 'gplots' ...
written 28 days ago by fereshteh30
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Comment: A: How can i do enrichment analysis more precisely for differential expression anal
... Hello b.nota, I got error in installation? had non-zero exit status how i can use gogadget package in R? ...
written 28 days ago by fereshteh30
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How can i do enrichment analysis more precisely for differential expression analysis results ?
... I did differential expression analysis and I want to identify most related pathways to my leukemia sample, I tried many different websites (toppfun, enrichR, GSEA,) but the results are huge How can I do enrichment analysis more specifically? to fine more related results ...
rna-seq written 29 days ago by fereshteh30
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Comment: C: What is the exact number of gene that we can detect from differentially expresse
... thank you JC I'm new in differential expressed gene, could you please guide me more about filtering by genes? ...
written 6 weeks ago by fereshteh30

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