User: james.hawley

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james.hawley10
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Posts by james.hawley

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Comment: C: Counting methylated and unmethylated CpGs in BSseq reads from bam file
... Bismark calls methylation values and stores the calls in the `XM` tag of each read in the BAM file. You can use MethylDackel do this, or you can count the number of 'z' and 'Z' characters for each read (pair) in the BAM ...
written 16 days ago by james.hawley10
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Answer: A: How to assign PAM50 subtypes to RNA seq data?
... Take a look at the `molecular.subtyping` in the [genefu](https://www.bioconductor.org/packages/release/bioc/html/genefu.html) Bioconductor package ...
written 13 months ago by james.hawley10

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