User: kfletcher

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kfletcher40
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Posts by kfletcher

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Comment: C: How to generate contigs from bam alignment
... How would this approach deal with indels? ...
written 15 months ago by kfletcher40
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Answer: A: Gff3 - moving an annotation from scaffold level to pseudomolecule level
... Would recommend flo https://github.com/wurmlab/flo It doesn't do exactly as you request. From memory, flo instead aligns the two assemblies and produces a new GFF file on the second assembly. One thing, the gene lines have to be removed from the GFF file. They provide a script to do so. I don't th ...
written 23 months ago by kfletcher40

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