Moderator: Ashutosh Pandey
Ashutosh Pandey ♦ 11k
- Reputation:
- 11,220
- Status:
- Trusted
- Location:
- Philadelphia
- Website:
- https://www.linkedin.c...
- Scholar ID:
- Google Scholar Page
- Last seen:
- 3 days, 4 hours ago
- Joined:
- 6 years, 11 months ago
- Email:
- a***********@gmail.com
I am a computational biologist at GlaxoSmithKline. My research interest focuses on using high-throughput genetic and genomic data to study the impact of genomic variation on gene expression and phenotypes.
Research Interests:
Computational Genomics
Next generation sequencing
Complex trait analysis
Information retrieval
Posts by Ashutosh Pandey
<prev
• 1,200 results •
page 1 of 120 •
next >
0
votes
0
answers
826
views
0
answers
... I did my Masters and PhD from Memphis. Great place to be a student as cost of living is low. ...
written 14 months ago by
Ashutosh Pandey ♦ 11k
1
vote
0
answers
994
views
0
answers
Comment:
C: sequence in different line
... Substitute tab or space with newline use unix tr ...
written 19 months ago by
Ashutosh Pandey ♦ 11k
0
votes
0
answers
1.9k
views
0
answers
... **Host-Microbe Bioinformatics Post-Doctoral Fellow
GlaxoSmithKline, Collegeville, Pennsylvania**
In GlaxoSmithKline R&D (http://www.gsk.com/research.html), computational biologists have a broad and essential role in drug discovery through the integrative analysis of internal and external biome ...
written 2.4 years ago by
Ashutosh Pandey ♦ 11k
2
votes
0
answers
1.7k
views
0
answers
... **Employment type**
Full-time
**Experience**
Mid-Senior level
**Job description**
Details: The Computational Biology Department supports Drug Discovery and Development at GSK Pharmaceuticals R&D through the integrative analysis of internal and external biomedical data. Our analysis competenci ...
written 3.0 years ago by
Ashutosh Pandey ♦ 11k
1
vote
0
answers
1.2k
views
0
answers
... **Employment type**
Full-time
**Experience**
Mid-Senior level
**Basic Qualifications**
A first or an advanced degree (MS or PhD) in a life science, physical science, computational science or mathematics; or equivalent experience.
A thorough understanding of linux and windows.
Demonstrated skills ...
written 3.0 years ago by
Ashutosh Pandey ♦ 11k
4
votes
1
answer
3.1k
views
1
answers
... Adding 1 is more suitable as log2 of values less than 1 will give negative values.
...
written 3.4 years ago by
Ashutosh Pandey ♦ 11k
0
votes
1
answer
970
views
1
answers
... Assuming that your genome of interest is 'Human'
Go to Table Browser
Select 1) genome as 'Human' 2) group as 'Comparative Genomics' 3) track as 'Conservation' 4) table as 'phastCons100way' 5) enter coordinates for your region of interest in position 6) Select the output format and click on get out ...
written 3.4 years ago by
Ashutosh Pandey ♦ 11k
2
votes
0
answers
1.2k
views
0
answers
Comment:
C: BWA and mapping
... It will have both reads for a pair irrespective of whether one of them remained unmapped or mapped at too many positions. The second column in the BAM file will be properly flagged as explained here: http://broadinstitute.github.io/picard/explain-flags.html
...
written 3.4 years ago by
Ashutosh Pandey ♦ 11k
2
votes
5
answers
1.3k
views
5
answers
... If I understood your question GATK's VariantAnnotator may help you. It can take dbSNP vcf file and your vcf file as inputs and append dbSNP rsIDs to your vcf file. Below is the link: correctly https://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_gatk_tools_walkers_annotator_VariantAnnotat ...
written 3.5 years ago by
Ashutosh Pandey ♦ 11k
1
vote
1
answer
1.7k
views
1
answers
... The two resources I can think of now:
1) GERP++ scores: http://mendel.stanford.edu/SidowLab/downloads/gerp/
2) PhastCons scores from UCSC: Here is a relevant post (https://www.biostars.org/p/16724/#16731)
...
written 3.5 years ago by
Ashutosh Pandey ♦ 11k
Latest awards to Ashutosh Pandey
Good Answer
20 days ago,
created an answer that was upvoted at least 5 times.
For A: What Are The Differences Between The Dna Sequences Of Two Alleles Of A Gene
Appreciated
20 days ago,
created a post with more than 5 votes.
For A: How to find the differences between filtered and unfiltered VCF files
Appreciated
26 days ago,
created a post with more than 5 votes.
For A: How to find the differences between filtered and unfiltered VCF files
Teacher
9 months ago,
created an answer with at least 3 up-votes.
For A: Samtools: Why Have I Been Using "View" Command For Mpileup
Scholar
9 months ago,
created an answer that has been accepted.
For A: what is the properties of filtering the vcf files
Popular Question
9 months ago,
created a question with more than 1,000 views.
For Host-Microbe Bioinformatics Post-Doctoral Fellow GlaxoSmithKline, Collegeville, Pennsylvania
Good Answer
9 months ago,
created an answer that was upvoted at least 5 times.
For A: How Coverage percentage is calculated in NGS data
Appreciated
9 months ago,
created a post with more than 5 votes.
For A: How Coverage percentage is calculated in NGS data
Appreciated
9 months ago,
created a post with more than 5 votes.
For A: How to find the differences between filtered and unfiltered VCF files
Commentator
13 months ago,
created a comment with at least 3 up-votes.
For C: hello i know i must accept that im a stupid
Scholar
13 months ago,
created an answer that has been accepted.
For A: what is the properties of filtering the vcf files
Appreciated
13 months ago,
created a post with more than 5 votes.
For A: How to find the differences between filtered and unfiltered VCF files
Appreciated
17 months ago,
created a post with more than 5 votes.
For A: How to find the differences between filtered and unfiltered VCF files
Appreciated
19 months ago,
created a post with more than 5 votes.
For A: How to find the differences between filtered and unfiltered VCF files
Popular Question
19 months ago,
created a question with more than 1,000 views.
For Host-Microbe Bioinformatics Post-Doctoral Fellow GlaxoSmithKline, Collegeville, Pennsylvania
Popular Question
19 months ago,
created a question with more than 1,000 views.
For Host-Microbe Bioinformatics Post-Doctoral Fellow GlaxoSmithKline, Collegeville, Pennsylvania
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1016 users visited in the last hour