Moderator: Ashutosh Pandey

gravatar for Ashutosh Pandey
Reputation:
11,090
Status:
Trusted
Location:
Philadelphia
Website:
https://www.linkedin.c...
Scholar ID:
Google Scholar Page
Last seen:
5 months, 1 week ago
Joined:
6 years, 7 months ago
Email:
a***********@gmail.com

I am a computational biologist at GlaxoSmithKline. My research interest focuses on using high-throughput genetic and genomic data to study the impact of genomic variation on gene expression and phenotypes.

Research Interests:

Computational Genomics
Next generation sequencing
Complex trait analysis
Information retrieval 

Posts by Ashutosh Pandey

<prev • 1,200 results • page 1 of 120 • next >
0
votes
0
answers
656
views
0
answers
Comment: C: MS/PhD Position: Computational Systems Biology, The University of Memphis
... I did my Masters and PhD from Memphis. Great place to be a student as cost of living is low. ...
written 10 months ago by Ashutosh Pandey11k
1
vote
0
answers
867
views
0
answers
Comment: C: sequence in different line
... Substitute tab or space with newline use unix tr ...
written 15 months ago by Ashutosh Pandey11k
0
votes
0
answers
1.8k
views
0
answers
Job: Host-Microbe Bioinformatics Post-Doctoral Fellow GlaxoSmithKline, Collegeville, Pennsylvania
... **Host-Microbe Bioinformatics Post-Doctoral Fellow GlaxoSmithKline, Collegeville, Pennsylvania** In GlaxoSmithKline R&D (http://www.gsk.com/research.html), computational biologists have a broad and essential role in drug discovery through the integrative analysis of internal and external biome ...
microbiome job postdoc written 2.1 years ago by Ashutosh Pandey11k
2
votes
0
answers
1.6k
views
0
answers
Job: Computational Biologist, GlaxoSmithKline - King of Prussia, PA
... **Employment type** Full-time **Experience** Mid-Senior level **Job description** Details: The Computational Biology Department supports Drug Discovery and Development at GSK Pharmaceuticals R&D through the integrative analysis of internal and external biomedical data. Our analysis competenci ...
computational biologist job written 2.6 years ago by Ashutosh Pandey11k
1
vote
0
answers
1.1k
views
0
answers
Job: Computational Biology Data Manager, GlaxoSmithKline - King of Prussia, PA
... **Employment type** Full-time **Experience** Mid-Senior level **Basic Qualifications** A first or an advanced degree (MS or PhD) in a life science, physical science, computational science or mathematics; or equivalent experience. A thorough understanding of linux and windows. Demonstrated skills ...
data manager computational biologist job written 2.6 years ago by Ashutosh Pandey11k
4
votes
1
answer
2.9k
views
1
answers
Comment: C: Log transformation of RPKM data for PCA analysis
... Adding 1 is more suitable as log2 of values less than 1 will give negative values.    ...
written 3.1 years ago by Ashutosh Pandey11k
0
votes
1
answer
880
views
1
answers
Comment: C: Using phastCons30way in UCSC table browser
... Assuming that your genome of interest is 'Human' Go to Table Browser Select 1) genome as 'Human' 2) group as 'Comparative Genomics' 3) track as 'Conservation' 4) table as 'phastCons100way' 5) enter coordinates for your region of interest in position 6) Select the output format and click on get out ...
written 3.1 years ago by Ashutosh Pandey11k
2
votes
0
answers
1.1k
views
0
answers
Comment: C: BWA and mapping
... It will have both reads for a pair irrespective of whether one of them remained unmapped or mapped at too many positions. The second column in the BAM file will be properly flagged as explained here: http://broadinstitute.github.io/picard/explain-flags.html ...
written 3.1 years ago by Ashutosh Pandey11k
2
votes
5
answers
1.2k
views
5
answers
Answer: C: Replace vcf in-house variant IDs with dnSNP variant IDs
... If I understood your question GATK's VariantAnnotator may help you. It can take dbSNP vcf file and your vcf file as inputs and append dbSNP rsIDs to your vcf file. Below is the link: correctly https://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_gatk_tools_walkers_annotator_VariantAnnotat ...
written 3.1 years ago by Ashutosh Pandey11k
1
vote
1
answer
1.5k
views
1
answers
Comment: C: Conservation score for selected species
... The two resources I can think of now: 1) GERP++ scores: http://mendel.stanford.edu/SidowLab/downloads/gerp/ 2) PhastCons scores from UCSC: Here is a relevant post (https://www.biostars.org/p/16724/#16731) ...
written 3.1 years ago by Ashutosh Pandey11k

Latest awards to Ashutosh Pandey

Student 9 months ago, asked a question with at least 3 up-votes. For Bam Header Edit
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Compare Vcf Files
Commentator 9 months ago, created a comment with at least 3 up-votes. For C: hello i know i must accept that im a stupid
Scholar 9 months ago, created an answer that has been accepted. For A: what is the properties of filtering the vcf files
Appreciated 9 months ago, created a post with more than 5 votes. For A: How to find the differences between filtered and unfiltered VCF files
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Compare Vcf Files
Appreciated 13 months ago, created a post with more than 5 votes. For A: Lift-over on a VCF
Appreciated 13 months ago, created a post with more than 5 votes. For A: How to find the differences between filtered and unfiltered VCF files
Appreciated 15 months ago, created a post with more than 5 votes. For A: How to find the differences between filtered and unfiltered VCF files
Appreciated 16 months ago, created a post with more than 5 votes. For A: How to find the differences between filtered and unfiltered VCF files
Commentator 16 months ago, created a comment with at least 3 up-votes. For C: hello i know i must accept that im a stupid
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Compare Vcf Files
Good Answer 17 months ago, created an answer that was upvoted at least 5 times. For A: What Are The Differences Between The Dna Sequences Of Two Alleles Of A Gene
Great Question 23 months ago, created a question with more than 5,000 views. For Duplicate Reads In Rnaseq
Prophet 23 months ago, created a post with more than 20 followers. For Bam Header Edit
Good Question 23 months ago, asked a question that was upvoted at least 5 times. For Bam Header Edit
Good Answer 23 months ago, created an answer that was upvoted at least 5 times. For A: What Are The Differences Between The Dna Sequences Of Two Alleles Of A Gene
Popular Question 23 months ago, created a question with more than 1,000 views. For Mouse To Human Coordinates
Scholar 23 months ago, created an answer that has been accepted. For A: what is the properties of filtering the vcf files
Scholar 23 months ago, created an answer that has been accepted. For A: NGS pipeline analyses
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: Compare Vcf Files
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: Samtools: Why Have I Been Using "View" Command For Mpileup

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1586 users visited in the last hour