User: Yingzi Zhang

gravatar for Yingzi Zhang
Yingzi Zhang30
Reputation:
30
Status:
New User
Location:
Beijing
Last seen:
1 week, 4 days ago
Joined:
3 months, 1 week ago
Email:
z******@yeah.net

Posts by Yingzi Zhang

<prev • 38 results • page 1 of 4 • next >
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how to find the locations of protein products of a certain list of genes?
... Dear all, I need to find locations of protein products of a certain list of genes. For example, TLR1(toll like receptor 1) locates on the cell membrane. Is there any database can realize this goal? I know uniprot subcellular location. But it seems only 400+ genes are in the database. Is there any ...
software error written 25 days ago by Yingzi Zhang30 • updated 25 days ago by Pierre Lindenbaum112k
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Comment: C: how to use regular expression to grasp information before "GO:" or "#N/A"
... Thank you for the suggestion. I couldn't find a answer button. I could only see "ADD REPLY" so I clicked it. sorry, are you able to modify this? Yingzi ...
written 7 weeks ago by Yingzi Zhang30
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Comment: C: how to use regular expression to grasp information before "GO:" or "#N/A"
... Thank you so much. :) ...
written 8 weeks ago by Yingzi Zhang30
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how to use regular expression to grasp information before "GO:" or "#N/A"
... Hi all, I don't know whether it's polite to ask this direct simple question in biostars. But it do trouble me the whole day. My raw data is like this: ENSSSCP00000055957.1 Protein of unknown function (DUF1466) RCS1 #N/A ENSSSCP00000041172.1 Ras family Small GTPase supe ...
python written 8 weeks ago by Yingzi Zhang30
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Comment: C: GATK: how to find and use GenomeAnalysisTK.jar under java
... Yes, and I see many slight differences in options description. Thank you! ...
written 8 weeks ago by Yingzi Zhang30
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GATK: how to find and use GenomeAnalysisTK.jar under java
... I downloaded the gatk-4.0.6.0 package and unzipped it. I need to run the command `java -jar GenomeAnalysisTK.jar` but I couldn't find where GenomeAnalysisTK.jar is. How please? The list in the package are the followings. gatk gatk-package-4.0.6.0-local.jar scripts ...
software error written 8 weeks ago by Yingzi Zhang30 • updated 8 weeks ago by genomax55k
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Comment: C: task killed during SOAPdenovo's running
... They are multiple runs of the same library. I am not clear how to arrange runs in one or different library/libraries. And I am not clear how to set the option `rank =` neither. I will take your advice to estimate peak memory usage first. :) Thank you. Proof positively, I tried to ran the 7th librar ...
written 10 weeks ago by Yingzi Zhang30
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Comment: C: task killed during SOAPdenovo's running
... Yes i am the only user. I have about 400G reads in total. Did you have experience of how much memory I need? ...
written 10 weeks ago by Yingzi Zhang30
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Comment: C: task killed during SOAPdenovo's running
... RAM 768Gb; internal storage 50Tb ...
written 11 weeks ago by Yingzi Zhang30
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Comment: C: task killed during SOAPdenovo's running
... Yes. It's #config_file# max_rd_len=100 [LIB] avg_ins=469 reverse_seq=0 asm_flags=3 rank=1 map_len=32 q1=1_1.fastq q2=1_2.fastq [LIB] avg_ins=467 reverse_seq=0 asm_flags=3 rank=1 q1=2_1.fastq q2=2_2.fastq [LIB] avg_ins=474 ...
written 11 weeks ago by Yingzi Zhang30

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Supporter 8 weeks ago, voted at least 25 times.

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