User: Nandini

gravatar for Nandini
Nandini760
Reputation:
760
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Trusted
Location:
London
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Google Scholar Page
Last seen:
4 hours ago
Joined:
6 years, 10 months ago
Email:
n********************@gmail.com

Bioinformatician

Develop and maintain pipeline(s) for WES, Targeted gene sequencing, mtDNA NGS analysis

Posts by Nandini

<prev • 192 results • page 1 of 20 • next >
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Comment: C: how to convert a list of genes to BED file?
... Have you tried [UCSC table browser][1] ? [1]: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=711027113_pLhHGH6YmOysUzCgwrfAnskhsBBg ...
written 7 days ago by Nandini760
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Comment: C: How to extract SNPs from vcf file based on Population
... It should work for all chromosomes. Does your vcf input file have all chromosomes ? ...
written 9 days ago by Nandini760
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Comment: C: File format for HGMD pro file flat
... tried that - there is no download option for files there ...
written 27 days ago by Nandini760
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Comment: C: File format for HGMD pro file flat
... I thought so... Okay, I'll try getting in touch with HGMD. ...
written 27 days ago by Nandini760
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Comment: C: File format for HGMD pro file flat
... @finswimmer, I do not know how the file looks like - hence the question. I would like to know the file format and if its compatible to use in such annotation tools. I have been asked to incorporate this into our variant annotation pipeline and HGMD pro licence is not free, so before we apply, I wa ...
written 27 days ago by Nandini760
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File format for HGMD pro file flat
... Hello, does anyone here use the HGMD pro flat file? Can I know the format of the flat file and if I can incorporate it within annovar for variant annotation ? Many thanks ...
annovar hgmd file format variant analysis written 27 days ago by Nandini760
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Comment: C: Extract info on OMIM Phenotype
... thank you so much! This works perfect! ...
written 4 weeks ago by Nandini760
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Extract info on OMIM Phenotype
... Hello, I have around 900 gene symbols and its Gene ID (HGNC) for which I need to extract all its corresponding OMIM phenotype. Is there a way to do it or a tool that does this ? For example, *ABCA1* with HGNC ID 13666, the info to extract is listed here in column "[Phenotype][1]" Thank you, ...
database omim extract written 4 weeks ago by Nandini760 • updated 4 weeks ago by genomax62k
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Comment: C: GWAS data analysis strategy or pipeline
... Most of it depends on the aim of your project. What are you trying to achieve from your GWAS study ? Is there an aim to this project ? ...
written 3 months ago by Nandini760
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Comment: C: Alzheimer's disease and its classification
... all SNPs in IGAP identified to date are "susceptible loci" -> meaning there are mostly likely to be associated with a RISK of developing late onset Alzheimer's . The link in my comment above gives you the data or the summary statistics for IGAP. IGAP was a big study that constituted of many many ...
written 3 months ago by Nandini760

Latest awards to Nandini

Popular Question 10 weeks ago, created a question with more than 1,000 views. For How to interpret heterozygosity rate ?
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Single rare variant approaches
Popular Question 3 months ago, created a question with more than 1,000 views. For How to interpret heterozygosity rate ?
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Great Question 4 months ago, created a question with more than 5,000 views. For Calculate z-scores from GWAS summary stats
Popular Question 5 months ago, created a question with more than 1,000 views. For How to interpret heterozygosity rate ?
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Popular Question 9 months ago, created a question with more than 1,000 views. For How to interpret heterozygosity rate ?
Popular Question 9 months ago, created a question with more than 1,000 views. For extract SNPs from compressed PLINK files
Popular Question 10 months ago, created a question with more than 1,000 views. For How to interpret heterozygosity rate ?
Great Question 11 months ago, created a question with more than 5,000 views. For Pros and cons of Illumina HiSeq and Next Seq
Appreciated 11 months ago, created a post with more than 5 votes. For A: How To Revert Allele Data To Atgc With Plink After Recoding To 12 Format
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: How To Revert Allele Data To Atgc With Plink After Recoding To 12 Format
Scholar 11 months ago, created an answer that has been accepted. For A: where to get the gene annotations for the latest build 37 - for plotting regiona
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: How To Revert Allele Data To Atgc With Plink After Recoding To 12 Format
Popular Question 13 months ago, created a question with more than 1,000 views. For How to interpret heterozygosity rate ?
Scholar 13 months ago, created an answer that has been accepted. For A: where to get the gene annotations for the latest build 37 - for plotting regiona
Popular Question 14 months ago, created a question with more than 1,000 views. For How to interpret heterozygosity rate ?
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Popular Question 14 months ago, created a question with more than 1,000 views. For How to interpret heterozygosity rate ?
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