User: 29aprilkrutika

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Posts by 29aprilkrutika

<prev • 5 results • page 1 of 1 • next >
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Answer: A: Error while downloading data from database[EGA]
... I requested EGA to create a aspera account for me with the dataset, it was easy enough to download the data using their download.sh script. You will need to ask for a decryption key for the data as well. ...
written 3 months ago by 29aprilkrutika10
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Comment: C: Gistic input error : No copy number data detected
... Here is information I've followed to generate the segmentation data and marker file: https://groups.google.com/a/broadinstitute.org/forum/#!searchin/gistic-forum/Whole$20Exome%7Csort:relevance/gistic-forum/BUjH7LF3T70/5rWlcPI5DAAJ . I wanted to clarify if you used the same method when doing a combin ...
written 4 months ago by 29aprilkrutika10
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Comment: C: Error while downloading data from database[EGA]
... I'm using nohup in an ec2 instance on AWS to download the data. Can there be any issue with that? ...
written 4 months ago by 29aprilkrutika10
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Comment: C: Gistic input error : No copy number data detected
... Could you please provide details regarding how you generated this segmentation files for WES and WGS control freec data? I was wondering if you did a window based marker file , exon-level or something else? Thanks! ...
written 4 months ago by 29aprilkrutika10
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Comment: A: Error while downloading data from database[EGA]
... I'm having the same problem. Any solutions? I did contact EGA help desk and they said that their client had some issues which has been fixed and is up and running. But I still seem to have this problem. ...
written 4 months ago by 29aprilkrutika10

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