User: mdsiddra

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mdsiddra10
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4 days, 13 hours ago
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3 months ago
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Posts by mdsiddra

<prev • 83 results • page 1 of 9 • next >
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Algorithm for initial tree topology for Parsimony tree
... I have been using MEGA software for reconstructing parsimony tree using nucleotide and amino acid sequence files. The software gives different options for 'MP search methods' which are applied on initial tree topology and a tree with minimum number of evolutionary changes is resulted, but on which b ...
phylogenetics written 8 days ago by mdsiddra10
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Comment: C: How to handle the phylip sequence file through amino acid characters?
... Hello mdsiddra! We believe that this post does not fit the main topic of this site. This is being closed because this has been asked earlier somewhere else. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If ...
written 13 days ago by mdsiddra10
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Comment: C: How to handle the phylip sequence file through amino acid characters?
... I'm extremely sorry for this mistake. Its just that I was a little stressed about my work and I have done this by mistake. I'll remove this at once. This is so disappointing I know, but I'm sorry, I could'nt get how I have done this. ...
written 13 days ago by mdsiddra10
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Comment: C: How can I get all trees resulting to final parsimonious tree using biopython?
... alright then.. thankyou for the response. ...
written 17 days ago by mdsiddra10
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How can I get all trees resulting to final parsimonious tree using biopython?
... I am using python 3 and Biopython 1.72 . I have been reconstructing a parsimony tree using my aligned protein sequence file with biopython which results in single parsimony tree which is the best scored tree. I need to know what is the way I can have all the initial trees before the best tree was re ...
python biopython written 17 days ago by mdsiddra10
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Comment: C: How to handle the phylip sequence file through amino acid characters?
... Alright, I am gonna try using this to access my point of interest. Thankyou for the response. ...
written 18 days ago by mdsiddra10
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Comment: C: Generate all NNI-neighbours of a tree
... @phylomat , I also have similar question but I want it to be done in python and not 'R'. Can anyone suggest any python libraries / compiled source code that can do it? ...
written 24 days ago by mdsiddra10
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Comment: C: A comparison of 'Closest-neighbour-interchange' and 'Nearest-neighbour-interchna
... Yes , I guess this is right, I have compared the MEGA older and newer versions and I have found the same you have suggested. Thankyou for this helpful guidance. ...
written 24 days ago by mdsiddra10
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Comment: C: A comparison of 'Closest-neighbour-interchange' and 'Nearest-neighbour-interchna
... Oh sorry for that, I forgot to mention that I was talking about MEGA software. And I think I have found my answer in suggestions by other. Thankyou for your helpful response. ...
written 24 days ago by mdsiddra10
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A comparison of 'Closest-neighbour-interchange' and 'Nearest-neighbour-interchnage' algorithms
... I have been using different tools for reconstrucing a phylogenetic tree from data file. The tools provide different searching algorithms to be chosen for searching the best tree from data file. 'Closest-neighbour-interchange' (CNI) and 'Nearest-neighbour-interchnage' (NNI) are among those. I want t ...
algorithm written 25 days ago by mdsiddra10 • updated 25 days ago by h.mon19k

Latest awards to mdsiddra

Supporter 5 weeks ago, voted at least 25 times.
Rising Star 8 weeks ago, created 50 posts within first three months of joining.

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