User: mdsiddra

gravatar for mdsiddra
mdsiddra10
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New User
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Last seen:
18 hours ago
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4 months, 3 weeks ago
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Posts by mdsiddra

<prev • 87 results • page 1 of 9 • next >
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Comment: C: Code For Generating 'Consensus' Sequence From Pairwise Alignment
... This is a very useful piece of code. I want to ask if the consensus is to be desired for a multiple sequences alignment data, how will it be implemented? ...
written 18 hours ago by mdsiddra10
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Comment: C: Reconstruction of a generic tree using dynamic data with python
... As I have described earlier , I am a python script learner and I am learning the way phylogenetic softwares do the evolutionary analysis. This is why I am trying to understand how come a sequence data is utilized to give a tree structure without using any matrix or distance formula. ...
written 13 days ago by mdsiddra10
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Comment: C: Reconstruction of a generic tree using dynamic data with python
... Well, I guess this is right because it is not nonsense to use a random tree initially for the same reason you have described. I have tried many python packages but they do not do the way I seek. As I am a python script learner I would want to have python solution such that I may learn how a sequence ...
written 14 days ago by mdsiddra10
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Reconstruction of a generic tree using dynamic data with python
... I have been working with phylogenetic trees. I need to understand if there is some python library/source code which can use multiple sequence alignment files to give a general/random tree (as guide tree in clustalw) so that it may be used for further heuristics. I have data files in different format ...
python phylogenetics written 15 days ago by mdsiddra10 • updated 14 days ago by Brice Sarver2.5k
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Algorithm for initial tree topology for Parsimony tree
... I have been using MEGA software for reconstructing parsimony tree using nucleotide and amino acid sequence files. The software gives different options for 'MP search methods' which are applied on initial tree topology and a tree with minimum number of evolutionary changes is resulted, but on which b ...
phylogenetics written 8 weeks ago by mdsiddra10
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Comment: C: How to handle the phylip sequence file through amino acid characters?
... Hello mdsiddra! We believe that this post does not fit the main topic of this site. This is being closed because this has been asked earlier somewhere else. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If ...
written 9 weeks ago by mdsiddra10
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Comment: C: How to handle the phylip sequence file through amino acid characters?
... I'm extremely sorry for this mistake. Its just that I was a little stressed about my work and I have done this by mistake. I'll remove this at once. This is so disappointing I know, but I'm sorry, I could'nt get how I have done this. ...
written 9 weeks ago by mdsiddra10
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Comment: C: How can I get all trees resulting to final parsimonious tree using biopython?
... alright then.. thankyou for the response. ...
written 9 weeks ago by mdsiddra10
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How can I get all trees resulting to final parsimonious tree using biopython?
... I am using python 3 and Biopython 1.72 . I have been reconstructing a parsimony tree using my aligned protein sequence file with biopython which results in single parsimony tree which is the best scored tree. I need to know what is the way I can have all the initial trees before the best tree was re ...
python biopython written 9 weeks ago by mdsiddra10
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Comment: C: How to handle the phylip sequence file through amino acid characters?
... Alright, I am gonna try using this to access my point of interest. Thankyou for the response. ...
written 10 weeks ago by mdsiddra10

Latest awards to mdsiddra

Supporter 3 months ago, voted at least 25 times.
Rising Star 3 months ago, created 50 posts within first three months of joining.

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