User: shachigahoimbi

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Posts by shachigahoimbi

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Improve illumina short read assembly using PacBio long reads
... I am trying to assemble goat genome (genome size=2.9 Gb) and I have goat genome sequencing data from short and long reads 1) short read data from illumina (genome coverage ~37x). 2) long read data from PacBio (genome coverage ~1.5x) I have assembled illumina short reads using ABySS and SOAPdenovo a ...
genome assembly forum illumina and pacbio written 4 days ago by shachigahoimbi10 • updated 21 hours ago by Vitis2.1k
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Comment: C: Mapping SNP position to gff file
... Thank you so much for telling it in detail. I got the result exactly what I want. Thanks once again! ...
written 10 days ago by shachigahoimbi10
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Mapping SNP position to gff file
... I want to map my SNP positions to gff file and extract the mapped gene name, gene coordinates. I have two files, In one file, I have chromosome number and SNP position and another file which is gff file. I want to find if the SNPs are located inside genes and extract gene name and gene coo ...
gene snp written 14 days ago by shachigahoimbi10 • updated 14 days ago by husensofteng70

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