User: L_LANKA

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L_LANKA0
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Posts by L_LANKA

<prev • 17 results • page 1 of 2 • next >
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Comment: C: Box plot and genetic data
... Ok, no problem! :) I made a table and a temperature encryption key. ...
written 13 days ago by L_LANKA0
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Box plot and genetic data
... Hi! I have a question about box plot and data. I made the correlation analysis Spearman. I see a positive connection between gene and phenotypic expression. For example, I have gene AAAA where 1 and 3 - homozygous and 2- heterozygote. I have information about temperature and I make graduation this i ...
gene R written 13 days ago by L_LANKA0 • updated 12 days ago by Hamid Ghaedi570
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Comment: C: panel of normal files
... https://gatk.broadinstitute.org/hc/en-us/articles/360035531092#2 It can be useful ...
written 4 weeks ago by L_LANKA0
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Answer: A: panel of normal files
... > A Panel of Normal or PON is a type of resource used in somatic variant analysis. Depending on the type of variant you're looking for, the PON will be generated differently. What all PONs have in common is that (1) they are made from normal samples (in this context, "normal" means derived from h ...
written 5 weeks ago by L_LANKA0
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Comment: C: Compare many fasta-files
... Thank you so much! I will try to do with CD-HIT. ...
written 7 weeks ago by L_LANKA0
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Compare many fasta-files
... **Hello!** I have question about compare fasta-files. **Input:** I have ~11.000 fasta-files. This files are of different length, for example, some files around 29.000 bp but some files around 28.000 bp. **Output:** I would like have info about unique fasta-files. For example: We have 7 fasta- ...
fasta compare snp written 7 weeks ago by L_LANKA0
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Comment: C: Error: failed to locate the BWA index.
... I decided this problem. When I wrote in script: system("bwa mem /home/valera/bam/GRCh38_alignment.fa /home/valera/bam/Rep2.fastq.gz > /home/valera/bam/Prob_obr.sam") It`s work normal. ...
written 10 weeks ago by L_LANKA0
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Comment: C: Error: failed to locate the BWA index.
... I don't understand what is wrong. I make index by: bwa.path <- "/home/valera/Utilits/bwa-0.7.16a/bwa" system("bwa index -a bwtsw /home/valera/bam/GRCh38_alignment.fa") and It works good!!! When It finished worked (It made index), I ran script for sam. It prints again message about err ...
written 10 weeks ago by L_LANKA0
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Comment: C: Error: failed to locate the BWA index.
... Yes! When I used it in terminal, i wrote: cd ~/Utilits/bwa-0.7.16a/bwakit bwa It`s work normal. ...
written 10 weeks ago by L_LANKA0
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Comment: C: Error: failed to locate the BWA index.
... Thank you so mush! I tried use it now. I have error: /home/valera/Utilits/bwa-0.7.16a/bwa: not found and Предупреждение: В system(paste(bwa.path, "-M", index.path, "/home/valera/bam/Rep2.fastq.gz", : ошибка запуска команды ...
written 10 weeks ago by L_LANKA0

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