User: apaytuvi

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apaytuvi30
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a*******@sequentiabiotech.com

Posts by apaytuvi

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Buy PC for metagenomics
... It depends on what you want to do. In case you want to perform Whole Genome Sequencing metagenomics or metatranscriptomics, you would need quite a lot of RAM memory (specially for Kraken and CLARK), I would say more than 64Gb. It always depends on the pipeline used, megablastn + MEGAN is a slow appr ...
written 10 months ago by apaytuvi30
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Answer: A: How to know library types of public datasets ?
... For that, we follow the approach AIR (https://transcriptomics.sequentiabiotech.com) uses. You should need a BAM file and an annotation file (BED file with the exon coordinates and the corresponding strand). Afterwards, you can use: http://rseqc.sourceforge.net/#infer-experiment-py To know whether ...
written 10 months ago by apaytuvi30
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Answer: A: Tools For Metagenomic Data Analysis
... Gaia (https://metagenomics.sequentiabiotech.com/) for analyzing both amplicon and shotgun metagenomics (including metatranscriptomics). Everything's done online. ...
written 10 months ago by apaytuvi30
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Answer: A: List Of Cloud Genomics Companies
... Sequentia Biotech, which currently has the following online platforms for analyzing metagenomics and transcriptomics data: Gaia: https://metagenomics.sequentiabiotech.com/ AIR: https://transcriptomics.sequentiabiotech.com/ ...
written 10 months ago by apaytuvi30

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