User: afli

gravatar for afli
afli190
Reputation:
190
Status:
Trusted
Location:
China, Beijing, IGDB
Last seen:
3 months, 2 weeks ago
Joined:
1 year, 7 months ago
Email:
a***@genetics.ac.cn

Posts by afli

<prev • 125 results • page 1 of 13 • next >
0
votes
1
answer
181
views
1
answers
Comment: C: How to correlate phenotype values with gene expression levels
... Thank you asaf, I'll try the lm() function in R. ...
written 4 months ago by afli190
2
votes
1
answer
181
views
1
answer
How to correlate phenotype values with gene expression levels
... Hello, In my transgenic rice (over-expression gene A), there are several lines with different expression levels, I've measured phenotype XX for N individuals in each line. So how can I make the conclusion whether A has effect on phenotype XX ? For example, I have 10 lines with diverse expression l ...
gene expression phenotype written 4 months ago by afli190 • updated 4 months ago by Asaf7.0k
0
votes
4
answers
2.5k
views
4
answers
Comment: C: motif search with ATACseq
... I use bowtie2 to map reads to the genome. Sorry for my late reply. ...
written 7 months ago by afli190
0
votes
0
answers
338
views
0
answers
Comment: C: How to creat *over.chain.gz file
... Thank you very much! It is helpful! ...
written 8 months ago by afli190
2
votes
0
answers
338
views
0
answers
How to creat *over.chain.gz file
... Hello, I want to creat a chain file using the pipeline "http://genomewiki.ucsc.edu/index.php/DoSameSpeciesLiftOver.pl", I get the following error when excute doSameSpeciesLiftOver.pl. >doSameSpeciesLiftOver.pl -verbose=2 -buildDir=/home/afli/work/data/tmp/liftover/GCA_000004515.3_Glycine_max ...
liftover chain file written 8 months ago by afli190 • updated 8 months ago by Biostar ♦♦ 20
0
votes
0
answers
211
views
0
answers
Comment: C: How to get new SNP coordinate with new reference genome
... Thank you for your kindly suggestion! ...
written 8 months ago by afli190
1
vote
0
answers
211
views
0
answers
(Closed) How to get new SNP coordinate with new reference genome
... Hi, I have a list of SNPs coordinates corresponding to IRGSP 4.0 reference genome, how can I get the right coordinates of these SNPs in another rice reference genome such as IRGSP 1.0 reference genome? Thank you very much! Best, Aifu. ...
reference snp coordinate written 8 months ago by afli190
0
votes
0
answers
560
views
0
answers
How to install tcl/tk in R in linux without root permission
... Hi, I've met some troubles when installing tcl/tk in R3.5.1 without root. I use the following configure information: ./configure --prefix=/home/afli/work/softwares/R3.5.1_afli --with-tcltk --with-tcl-config=/home/afli/work/softwares/Fortcl/lib/tclConfig.sh --with-tk-config=/home/afli/work/softw ...
tcl/tk R linux written 9 months ago by afli190
4
votes
2
answers
718
views
6 follow
2
answers
How to analyse TXT format microarray data
... Dear friend, I want to analyse some microarray data in TXT format. I analyse CEL format data previously, but this time I could hardly find any procedures to analyse the TXT format data. My purpose is to find the differential genes between each two samples. Can someone tell me how to analyse the TXT ...
microarray txt written 12 months ago by afli190 • updated 12 months ago by Friederike5.2k
1
vote
1
answer
631
views
1
answers
Comment: C: How to study gene expression network?
... Nice to meet you again, and thank you very much for your suggestions Kevin! ...
written 12 months ago by afli190

Latest awards to afli

Popular Question 4 months ago, created a question with more than 1,000 views. For RNA-seq mapping rate
Supporter 12 months ago, voted at least 25 times.
Teacher 13 months ago, created an answer with at least 3 up-votes. For C: DEseq2 logfold interpretation
Centurion 15 months ago, created 100 posts.
Scholar 15 months ago, created an answer that has been accepted. For C: DEseq2 logfold interpretation
Scholar 15 months ago, created an answer that has been accepted. For C: DEseq2 logfold interpretation
Scholar 16 months ago, created an answer that has been accepted. For A: Compare expression of one group to the mean of others using DESeq2
Teacher 16 months ago, created an answer with at least 3 up-votes. For C: DEseq2 logfold interpretation
Scholar 16 months ago, created an answer that has been accepted. For A: Compare expression of one group to the mean of others using DESeq2
Rising Star 17 months ago, created 50 posts within first three months of joining.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1704 users visited in the last hour