User: afli

gravatar for afli
afli190
Reputation:
190
Status:
Trusted
Location:
China, Beijing, IGDB
Last seen:
21 minutes ago
Joined:
1 year ago
Email:
a***@genetics.ac.cn

Posts by afli

<prev • 123 results • page 1 of 13 • next >
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Comment: C: motif search with ATACseq
... I use bowtie2 to map reads to the genome. Sorry for my late reply. ...
written 8 days ago by afli190
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Comment: C: How to creat *over.chain.gz file
... Thank you very much! It is helpful! ...
written 6 weeks ago by afli190
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How to creat *over.chain.gz file
... Hello, I want to creat a chain file using the pipeline "http://genomewiki.ucsc.edu/index.php/DoSameSpeciesLiftOver.pl", I get the following error when excute doSameSpeciesLiftOver.pl. >doSameSpeciesLiftOver.pl -verbose=2 -buildDir=/home/afli/work/data/tmp/liftover/GCA_000004515.3_Glycine_max ...
liftover chain file written 6 weeks ago by afli190 • updated 4 weeks ago by Biostar ♦♦ 20
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Comment: C: How to get new SNP coordinate with new reference genome
... Thank you for your kindly suggestion! ...
written 6 weeks ago by afli190
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(Closed) How to get new SNP coordinate with new reference genome
... Hi, I have a list of SNPs coordinates corresponding to IRGSP 4.0 reference genome, how can I get the right coordinates of these SNPs in another rice reference genome such as IRGSP 1.0 reference genome? Thank you very much! Best, Aifu. ...
reference snp coordinate written 6 weeks ago by afli190
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How to install tcl/tk in R in linux without root permission
... Hi, I've met some troubles when installing tcl/tk in R3.5.1 without root. I use the following configure information: ./configure --prefix=/home/afli/work/softwares/R3.5.1_afli --with-tcltk --with-tcl-config=/home/afli/work/softwares/Fortcl/lib/tclConfig.sh --with-tk-config=/home/afli/work/softw ...
tcl/tk R linux written 8 weeks ago by afli190
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How to analyse TXT format microarray data
... Dear friend, I want to analyse some microarray data in TXT format. I analyse CEL format data previously, but this time I could hardly find any procedures to analyse the TXT format data. My purpose is to find the differential genes between each two samples. Can someone tell me how to analyse the TXT ...
microarray txt written 4 months ago by afli190 • updated 4 months ago by Friederike4.5k
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Comment: C: How to study gene expression network?
... Nice to meet you again, and thank you very much for your suggestions Kevin! ...
written 4 months ago by afli190
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Comment: C: How to interpret Bayesian network for selected genes
... hello, how can I learn the probabilistic modeling of gene expression? Thank you! ...
written 5 months ago by afli190
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How to study gene expression network?
... Hi, I'm new in bioinformatics and I'm very interested in methods that can model the gene expression variation. I did some analysis about gene expression cluster construction using WGCNA. I've read some papers that employ machine learning methods to analyse gene expression network. I want to learn th ...
bioinformation network gene expression written 5 months ago by afli190 • updated 5 months ago by mayagreen9930

Latest awards to afli

Supporter 4 months ago, voted at least 25 times.
Teacher 6 months ago, created an answer with at least 3 up-votes. For C: DEseq2 logfold interpretation
Centurion 8 months ago, created 100 posts.
Scholar 8 months ago, created an answer that has been accepted. For C: DEseq2 logfold interpretation
Scholar 8 months ago, created an answer that has been accepted. For C: DEseq2 logfold interpretation
Scholar 8 months ago, created an answer that has been accepted. For A: Compare expression of one group to the mean of others using DESeq2
Teacher 8 months ago, created an answer with at least 3 up-votes. For C: DEseq2 logfold interpretation
Scholar 9 months ago, created an answer that has been accepted. For A: Compare expression of one group to the mean of others using DESeq2
Rising Star 10 months ago, created 50 posts within first three months of joining.

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