User: afli

gravatar for afli
afli190
Reputation:
190
Status:
Trusted
Location:
China, Beijing, IGDB
Last seen:
11 months, 4 weeks ago
Joined:
2 years, 3 months ago
Email:
a***@genetics.ac.cn

Posts by afli

<prev • 125 results • page 1 of 13 • next >
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Comment: C: How to correlate phenotype values with gene expression levels
... Thank you asaf, I'll try the lm() function in R. ...
written 13 months ago by afli190
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How to correlate phenotype values with gene expression levels
... Hello, In my transgenic rice (over-expression gene A), there are several lines with different expression levels, I've measured phenotype XX for N individuals in each line. So how can I make the conclusion whether A has effect on phenotype XX ? For example, I have 10 lines with diverse expression l ...
gene expression phenotype written 13 months ago by afli190 • updated 13 months ago by Asaf8.4k
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Comment: C: motif search with ATACseq
... I use bowtie2 to map reads to the genome. Sorry for my late reply. ...
written 15 months ago by afli190
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Comment: C: How to creat *over.chain.gz file
... Thank you very much! It is helpful! ...
written 17 months ago by afli190
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How to creat *over.chain.gz file
... Hello, I want to creat a chain file using the pipeline "http://genomewiki.ucsc.edu/index.php/DoSameSpeciesLiftOver.pl", I get the following error when excute doSameSpeciesLiftOver.pl. >doSameSpeciesLiftOver.pl -verbose=2 -buildDir=/home/afli/work/data/tmp/liftover/GCA_000004515.3_Glycine_max ...
liftover chain file written 17 months ago by afli190 • updated 16 months ago by Biostar ♦♦ 20
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Comment: C: How to get new SNP coordinate with new reference genome
... Thank you for your kindly suggestion! ...
written 17 months ago by afli190
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(Closed) How to get new SNP coordinate with new reference genome
... Hi, I have a list of SNPs coordinates corresponding to IRGSP 4.0 reference genome, how can I get the right coordinates of these SNPs in another rice reference genome such as IRGSP 1.0 reference genome? Thank you very much! Best, Aifu. ...
reference snp coordinate written 17 months ago by afli190
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How to install tcl/tk in R in linux without root permission
... Hi, I've met some troubles when installing tcl/tk in R3.5.1 without root. I use the following configure information: ./configure --prefix=/home/afli/work/softwares/R3.5.1_afli --with-tcltk --with-tcl-config=/home/afli/work/softwares/Fortcl/lib/tclConfig.sh --with-tk-config=/home/afli/work/softw ...
tcl/tk R linux written 17 months ago by afli190
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How to analyse TXT format microarray data
... Dear friend, I want to analyse some microarray data in TXT format. I analyse CEL format data previously, but this time I could hardly find any procedures to analyse the TXT format data. My purpose is to find the differential genes between each two samples. Can someone tell me how to analyse the TXT ...
microarray txt written 20 months ago by afli190 • updated 20 months ago by Friederike6.4k
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Comment: C: How to study gene expression network?
... Nice to meet you again, and thank you very much for your suggestions Kevin! ...
written 20 months ago by afli190

Latest awards to afli

Popular Question 13 months ago, created a question with more than 1,000 views. For RNA-seq mapping rate
Supporter 20 months ago, voted at least 25 times.
Teacher 21 months ago, created an answer with at least 3 up-votes. For C: DEseq2 logfold interpretation
Centurion 24 months ago, created 100 posts.
Scholar 24 months ago, created an answer that has been accepted. For C: DEseq2 logfold interpretation
Scholar 2.0 years ago, created an answer that has been accepted. For C: DEseq2 logfold interpretation
Scholar 2.0 years ago, created an answer that has been accepted. For A: Compare expression of one group to the mean of others using DESeq2
Teacher 2.0 years ago, created an answer with at least 3 up-votes. For C: DEseq2 logfold interpretation
Scholar 2.0 years ago, created an answer that has been accepted. For A: Compare expression of one group to the mean of others using DESeq2
Rising Star 2.1 years ago, created 50 posts within first three months of joining.

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